updated background and links

PhilipChicco · Nov 27, 2024 · 11c039c · 11c039c
1 parent fbf7b15
commit 11c039c
Show file tree

Hide file tree

Showing 27 changed files with 358 additions and 247 deletions.
diff --git a/_config.yml b/_config.yml
@@ -7,6 +7,10 @@ url: "https://philipchicco.github.io"
 lang: en-US
 timezone: America/New_York
 
+# Google Analytics
+# Optional
+google_analytics: G-DYKEMKK790  # GA4 tracking ID
+
 # Build settings
 markdown: kramdown
 highlighter: rouge
@@ -47,4 +51,5 @@ exclude:
   - .git
   - .github
   - README.md
-  - test.sh
+  - test.sh
+  - run.sh
diff --git a/_data/publications.yml b/_data/publications.yml
@@ -3,68 +3,68 @@ featured:
     authors: "Philip Chikontwe, Meejeong Kim, Jaehoon Jeong, Hyun Jung Sung, Heounjeong Go, Soo Jeong Nam, Sang Hyun Park"
     venue: "IEEE Transactions on Medical Imaging"
     year: 2024
-    pdf: "#"
+    pdf: "https://ieeexplore.ieee.org/document/10640165"
 
   - title: "Low-Shot Prompt Tuning for Multiple Instance Learning Based Histology Classification"
     authors: "Philip Chikontwe, Myeongkyun Kang, Miguel Luna, Siwoo Nam, Sang Hyun Park"
     venue: "MICCAI"
     year: 2024
-    pdf: "#"
+    pdf: "https://link.springer.com/chapter/10.1007/978-3-031-16434-7_41"
 
   - title: "Dual Attention Multiple Instance Learning with Unsupervised Complementary Loss for COVID-19 Screening"
     authors: "Philip Chikontwe, Miguel Luna, Myeongkyun Kang, Kyung Soo Hong, June Hong Ahn, and Sang Hyun Park"
     venue: "Medical Image Analysis"
     year: 2021
-    pdf: "#"
+    pdf: "https://www.sciencedirect.com/science/article/pii/S1361841521001511"
 
   - title: "Weakly Supervised Segmentation on Neural Compressed Histopathology with Self-Equivariant Regularization"
     authors: "Philip Chikontwe, Hyun Jung Sung, Jaehoon Jong, Meejeong Kim, Heoungjeong Go, Soo Jeong Nam, and Sang Hyun Park"
     venue: "Medical Image Analysis"
     year: 2022
-    pdf: "#"
+    pdf: "https://www.sciencedirect.com/science/article/pii/S1361841522001293"
 
 all:
   - title: "Structure-preserving image translation for multi-source medical image domain adaptation"
     authors: "Kang, Myeongkyun, Philip Chikontwe, Donkyu Won, Miguel Luna, and Sang Hyun Park"
     venue: "Pattern Recognition"
     year: 2023
-    pdf: "https://www.sciencedirect.com/science/article/pii/YOUR_DOI"
-    doi: "https://doi.org/10.1016/YOUR_DOI"
+    #pdf: "https://www.sciencedirect.com/science/article/pii/YOUR_DOI"
+    #doi: "https://doi.org/10.1016/YOUR_DOI"
 
   - title: "Dual Attention Relation Network With Fine-Tuning for Few-Shot EEG Motor Imagery Classification"
     authors: "An, Sion, Soopil Kim, Philip Chikontwe, and Sang Hyun Park"
     venue: "IEEE Transactions on Neural Networks and Learning Systems"
     year: 2023
-    pdf: "#"
-    doi: "https://doi.org/10.1109/YOUR_DOI"
+    #pdf: "#"
+    #doi: "https://doi.org/10.1109/YOUR_DOI"
 
   - title: "Uncertainty-aware semi-supervised few shot segmentation"
     authors: "Soopil Kim, Philip Chikontwe, Sion An and Sang Hyun Park"
     venue: "Pattern Recognition"
     year: 2023
-    pdf: "https://www.sciencedirect.com/science/article/pii/YOUR_DOI"
-    code: "https://github.com/username/repo"
-    doi: "https://doi.org/10.1016/YOUR_DOI"
+    #pdf: "https://www.sciencedirect.com/science/article/pii/YOUR_DOI"
+    #code: "https://github.com/username/repo"
+    #doi: "https://doi.org/10.1016/YOUR_DOI"
 
   - title: "Weakly Supervised Segmentation on Neural Compressed Histopathology with Self-Equivariant Regularization"
     authors: "Philip Chikontwe, Hyun Jung Sung, Jaehoon Jong, Meejeong Kim, Heoungjeong Go, Soo Jeong Nam, and Sang Hyun Park"
     venue: "Medical Image Analysis"
     year: 2022
-    pdf: "https://www.sciencedirect.com/science/article/pii/YOUR_DOI"
-    code: "https://github.com/username/repo"
-    doi: "https://doi.org/10.1016/YOUR_DOI"
+    #pdf: "https://www.sciencedirect.com/science/article/pii/YOUR_DOI"
+    #code: "https://github.com/username/repo"
+    #doi: "https://doi.org/10.1016/YOUR_DOI"
 
   - title: "Transformation guided representation GAN for pose-invariant face recognition"
     authors: "Philip Chikontwe, Yongbin Gao, and Hyo Jong Lee"
     venue: "Multidimensional Systems and Signal Processing"
     year: 2021
-    pdf: "#"
-    doi: "https://doi.org/10.1007/YOUR_DOI"
+    #pdf: "#"
+    #doi: "https://doi.org/10.1007/YOUR_DOI"
 
   - title: "Dual Attention Multiple Instance Learning with Unsupervised Complementary Loss for COVID-19 Screening"
     authors: "Philip Chikontwe, Miguel Luna, Myeongkyun Kang, Kyung Soo Hong, June Hong Ahn, and Sang Hyun Park"
     venue: "Medical Image Analysis"
     year: 2021
-    pdf: "https://www.sciencedirect.com/science/article/pii/YOUR_DOI"
-    code: "https://github.com/username/repo"
-    doi: "https://doi.org/10.1016/YOUR_DOI"
+    #pdf: "https://www.sciencedirect.com/science/article/pii/YOUR_DOI"
+    #code: "https://github.com/username/repo"
+    #doi: "https://doi.org/10.1016/YOUR_DOI"
diff --git a/_includes/google-analytics.html b/_includes/google-analytics.html
@@ -0,0 +1,9 @@
+<!-- Google tag (gtag.js) -->
+<script async src="https://www.googletagmanager.com/gtag/js?id={{ site.google_analytics }}"></script>
+<script>
+  window.dataLayer = window.dataLayer || [];
+  function gtag(){dataLayer.push(arguments);}
+  gtag('js', new Date());
+
+  gtag('config', '{{ site.google_analytics }}');
+</script>
diff --git a/_layouts/default.html b/_layouts/default.html
@@ -6,6 +6,10 @@
     <link rel="stylesheet" href="{{ '/assets/css/style.css' | relative_url }}">
     <link rel="stylesheet" href="{{ '/assets/css/custom.css' | relative_url }}">
     {% seo %}
+
+    {% if site.google_analytics %}
+        {% include google-analytics.html %}
+    {% endif %}
 </head>
 <body>
   <div class="progress-bar" id="scrollProgress"></div>
@@ -20,13 +24,6 @@
       };
   </script>
 
-    <!-- <div class="theme-switch-wrapper">
-        <label class="theme-switch" for="checkbox">
-            <input type="checkbox" id="checkbox" />
-            <div class="slider round"></div>
-        </label>
-    </div> -->
-
     <div class="container">
         <header class="site-header">
           <div class="header-background"></div> <!-- New background div -->
@@ -35,7 +32,7 @@
               <img src="{{ site.logo | relative_url }}" alt="Profile" class="profile-image">
               {% endif %}
               <h1 class="site-title">{{ site.title }}</h1>
-              <p class="site-description">{{ site.description }}</p>
+              <h4 class="site-description">{{ site.description }}</h4>
           </div>
 
           <nav class="site-nav">

diff --git a/_posts/2024-06-29-new_paper.md b/_posts/2024-06-29-new_paper.md
@@ -1,6 +1,6 @@
 ---
 layout: default
-title: "Paper Accepted at MICCAI 2024"
+title: "Paper accepted at MICCAI 2024"
 date: 2024-06-29
 categories: news
 ---

diff --git a/_site/assets/css/custom.css b/_site/assets/css/custom.css
@@ -60,7 +60,18 @@ html {
 
 /* Header Styles */
 .site-header {
-  background-color: var(--header-bg);
+  position: relative;
+  width: 100%;
+  padding: 2rem 0;
+  background: linear-gradient(
+        rgba(255, 255, 255, 0.7), /* Adjust 0.9 to control background opacity */
+        rgba(255, 255, 255, 1.0)
+    ),
+    url('/assets/img/header-bg.webp');  /* Your image path */
+  background-size: cover;
+  background-position: center;
+
+  /*background-color: var(--header-bg);*/
   padding: 2rem 0;
   text-align: center;
   border-bottom: 1px solid var(--border-color);
@@ -362,6 +373,12 @@ input:checked + .slider:before {
   position: relative;
 }
 
+/* Default nav link size */
+.nav-link {
+  font-size: 1.1rem;  /* Increase base font size */
+  font-weight: 500;   /* Make it slightly bolder */
+}
+
 .nav-link::after {
   content: '';
   position: absolute;
@@ -719,7 +736,7 @@ input:checked + .slider:before {
 
 /* Enhanced Typography for Bio */
 .intro p {
-  font-size: 1.1rem;
+  font-size: 1rem;
   line-height: 1.8;
   margin-bottom: 1.5rem;
 }
@@ -1066,13 +1083,66 @@ body {
 }
 
 /* Update mobile styles for footer */
+/* Mobile-specific styles - add or update these */
 @media (max-width: 768px) {
-  .site-footer {
-      margin-top: 2rem;
-      padding: 1.5rem 0;
+  /* Header Layout */
+  .site-header {
+      position: relative;
+      padding: 1rem;
   }
-
-  .footer-content {
-      padding: 0 1rem;
+
+  .profile-section {
+      display: flex;
+      flex-direction: row;  /* Keep horizontal */
+      align-items: center;
+      gap: 1rem;
+      padding: 0;
+  }
+
+  .profile-image {
+      width: 80px;
+      height: 80px;
+      margin: 0;
+  }
+
+  /* Title and description */
+  .site-info {
+      text-align: left;
+      flex: 1;
   }
-}
+
+  .site-title {
+      font-size: 1.5rem;
+      margin: 0;
+  }
+
+  .site-description {
+      font-size: 0.9rem;
+      margin: 0.5rem 0;
+  }
+
+  /* Navigation */
+  .nav-links {
+      display: flex;
+      overflow-x: auto;
+      white-space: nowrap;
+      padding: 0.5rem 0;
+      margin: 0;
+      -webkit-overflow-scrolling: touch;
+      scrollbar-width: none;  /* Firefox */
+  }
+
+  .nav-links::-webkit-scrollbar {
+      display: none;  /* Chrome, Safari */
+  }
+
+  .nav-link {
+      flex: 0 0 auto;
+      padding: 0.5rem 1rem;
+      margin: 0 0.25rem;
+      /* updated */
+      font-size: 1rem;  /* Slightly smaller on mobile */
+      padding: 0.5rem 1rem;
+  }
+}
+
diff --git a/_site/assets/img/header-bg.webp b/_site/assets/img/header-bg.webp
diff --git a/_site/contact/index.html b/_site/contact/index.html
@@ -25,6 +25,18 @@
 {"@context":"https://schema.org","@type":"WebPage","author":{"@type":"Person","name":"Philip Chikontwe"},"description":"Research Fellow @ Yu Lab Harvard Medical School, Harvard University","headline":"Contact","publisher":{"@type":"Organization","logo":{"@type":"ImageObject","url":"http://localhost:4000/assets/img/headshot.png"},"name":"Philip Chikontwe"},"url":"http://localhost:4000/contact/"}</script>
 <!-- End Jekyll SEO tag -->
 
+
+
+        <!-- Google tag (gtag.js) -->
+<script async src="https://www.googletagmanager.com/gtag/js?id=G-DYKEMKK790"></script>
+<script>
+  window.dataLayer = window.dataLayer || [];
+  function gtag(){dataLayer.push(arguments);}
+  gtag('js', new Date());
+
+  gtag('config', 'G-DYKEMKK790');
+</script>
+
 </head>
 <body>
   <div class="progress-bar" id="scrollProgress"></div>
@@ -39,13 +51,6 @@
       };
   </script>
 
-    <!-- <div class="theme-switch-wrapper">
-        <label class="theme-switch" for="checkbox">
-            <input type="checkbox" id="checkbox" />
-            <div class="slider round"></div>
-        </label>
-    </div> -->
-
     <div class="container">
         <header class="site-header">
           <div class="header-background"></div> <!-- New background div -->
@@ -54,7 +59,7 @@
               <img src="/assets/img/headshot.png" alt="Profile" class="profile-image">
 
               <h1 class="site-title">Philip Chikontwe</h1>
-              <p class="site-description">Research Fellow @ Yu Lab | Harvard Medical School, Harvard University</p>
+              <h4 class="site-description">Research Fellow @ Yu Lab | Harvard Medical School, Harvard University</h4>
           </div>
 
           <nav class="site-nav">
@@ -78,7 +83,7 @@ <h2>Get in Touch</h2>
         <div class="contact-card">
             <div class="contact-icon">📍</div>
             <h3>Location</h3>
-            <p>Yu Lab, Harvard Medical School<br />Boston, MA 02115</p>
+            <p>Yu Lab, DBMI<br />Harvard Medical School<br />Boston, MA 02115</p>
         </div>
 
         <div class="contact-card">

diff --git a/_site/feed.xml b/_site/feed.xml
@@ -1,9 +1,9 @@
-<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en-US"><generator uri="https://jekyllrb.com/" version="3.9.5">Jekyll</generator><link href="http://localhost:4000/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/" rel="alternate" type="text/html" hreflang="en-US" /><updated>2024-11-27T01:54:12-05:00</updated><id>http://localhost:4000/feed.xml</id><title type="html">Philip Chikontwe</title><subtitle>Research Fellow @ Yu Lab | Harvard Medical School, Harvard University</subtitle><author><name>Philip Chikontwe</name></author><entry><title type="html">Paper published in IEEE TMI</title><link href="http://localhost:4000/news/2024/07/01/new_paper/" rel="alternate" type="text/html" title="Paper published in IEEE TMI" /><published>2024-07-01T00:00:00-04:00</published><updated>2024-07-01T00:00:00-04:00</updated><id>http://localhost:4000/news/2024/07/01/new_paper</id><content type="html" xml:base="http://localhost:4000/news/2024/07/01/new_paper/"><![CDATA[<div class="news-content reveal">
+<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en-US"><generator uri="https://jekyllrb.com/" version="3.9.5">Jekyll</generator><link href="http://localhost:4000/feed.xml" rel="self" type="application/atom+xml" /><link href="http://localhost:4000/" rel="alternate" type="text/html" hreflang="en-US" /><updated>2024-11-27T12:46:45-05:00</updated><id>http://localhost:4000/feed.xml</id><title type="html">Philip Chikontwe</title><subtitle>Research Fellow @ Yu Lab | Harvard Medical School, Harvard University</subtitle><author><name>Philip Chikontwe</name></author><entry><title type="html">Paper published in IEEE TMI</title><link href="http://localhost:4000/news/2024/07/01/new_paper/" rel="alternate" type="text/html" title="Paper published in IEEE TMI" /><published>2024-07-01T00:00:00-04:00</published><updated>2024-07-01T00:00:00-04:00</updated><id>http://localhost:4000/news/2024/07/01/new_paper</id><content type="html" xml:base="http://localhost:4000/news/2024/07/01/new_paper/"><![CDATA[<div class="news-content reveal">
     <h2 class="gradient-text">Paper published in IEEE TMI</h2>
-</div>]]></content><author><name>Philip Chikontwe</name></author><category term="news" /><summary type="html"><![CDATA[Paper published in IEEE TMI]]></summary></entry><entry><title type="html">Paper Accepted at MICCAI 2024</title><link href="http://localhost:4000/news/2024/06/29/new_paper/" rel="alternate" type="text/html" title="Paper Accepted at MICCAI 2024" /><published>2024-06-29T00:00:00-04:00</published><updated>2024-06-29T00:00:00-04:00</updated><id>http://localhost:4000/news/2024/06/29/new_paper</id><content type="html" xml:base="http://localhost:4000/news/2024/06/29/new_paper/"><![CDATA[<div class="news-content reveal">
-    <h2 class="gradient-text">Paper Accepted at MICCAI 2024</h2>
+</div>]]></content><author><name>Philip Chikontwe</name></author><category term="news" /><summary type="html"><![CDATA[Paper published in IEEE TMI]]></summary></entry><entry><title type="html">Paper accepted at MICCAI 2024</title><link href="http://localhost:4000/news/2024/06/29/new_paper/" rel="alternate" type="text/html" title="Paper accepted at MICCAI 2024" /><published>2024-06-29T00:00:00-04:00</published><updated>2024-06-29T00:00:00-04:00</updated><id>http://localhost:4000/news/2024/06/29/new_paper</id><content type="html" xml:base="http://localhost:4000/news/2024/06/29/new_paper/"><![CDATA[<div class="news-content reveal">
+    <h2 class="gradient-text">Paper accepted at MICCAI 2024</h2>
     <!-- <p>Our paper on "Low-Shot Prompting for WSI" has been accepted at MICCAI 2024. Thanks to all collaborators!</p> -->
-</div>]]></content><author><name>Philip Chikontwe</name></author><category term="news" /><summary type="html"><![CDATA[Paper Accepted at MICCAI 2024]]></summary></entry><entry><title type="html">Joined HMS Yu Lab</title><link href="http://localhost:4000/news/2024/05/02/lab-presentation/" rel="alternate" type="text/html" title="Joined HMS Yu Lab" /><published>2024-05-02T00:00:00-04:00</published><updated>2024-05-02T00:00:00-04:00</updated><id>http://localhost:4000/news/2024/05/02/lab-presentation</id><content type="html" xml:base="http://localhost:4000/news/2024/05/02/lab-presentation/"><![CDATA[<div class="news-content reveal">
+</div>]]></content><author><name>Philip Chikontwe</name></author><category term="news" /><summary type="html"><![CDATA[Paper accepted at MICCAI 2024]]></summary></entry><entry><title type="html">Joined HMS Yu Lab</title><link href="http://localhost:4000/news/2024/05/02/lab-presentation/" rel="alternate" type="text/html" title="Joined HMS Yu Lab" /><published>2024-05-02T00:00:00-04:00</published><updated>2024-05-02T00:00:00-04:00</updated><id>http://localhost:4000/news/2024/05/02/lab-presentation</id><content type="html" xml:base="http://localhost:4000/news/2024/05/02/lab-presentation/"><![CDATA[<div class="news-content reveal">
     <h2 class="gradient-text">Joined HMS Yu Lab</h2>
     <!-- <p>Joined Yu Lab at Harvard Medical School. Exciting!</p> -->
 </div>]]></content><author><name>Philip Chikontwe</name></author><category term="news" /><summary type="html"><![CDATA[Joined HMS Yu Lab]]></summary></entry></feed>