reinstate the ribosomal profiling term, and unobsolete homozygous neg…

…ative

Discussion: PavlidisLab/GemmaCuration#549

TGEMO.OWL

@@ -284,10 +284,9 @@
     <owl:Class rdf:about="http://gemma.msl.ubc.ca/ont/TGEMO_00001">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GENO_0000136"/>
         <obo:IAO_0000115>Double negative allele. Refers both to genetic null (missing gene/knock out) and phenotypic/functional null (inactive gene product). May be overloaded for severe loss-of-function alleles also.</obo:IAO_0000115>
-        <oboInOwl:hasExactSynonym>Nullizygous</oboInOwl:hasExactSynonym>
-        <oboInOwl:replacedBy rdf:resource="http://purl.obolibrary.org/obo/GENO_0000978"/>
+        <oboInOwl:hasDbXref rdf:resource="http://purl.obolibrary.org/obo/GENO_0000978"/>
+        <oboInOwl:hasNarrowSynonym>Nullizygous</oboInOwl:hasNarrowSynonym>
         <rdfs:label>Homozygous negative</rdfs:label>
-        <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
     </owl:Class>
 
 
@@ -1052,6 +1051,29 @@
 
 
 
+    <!-- http://gemma.msl.ubc.ca/ont/TGEMO:00103 -->
+
+    <owl:Class rdf:about="http://gemma.msl.ubc.ca/ont/TGEMO:00103">
+        <rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0001457"/>
+        <obo:IAO_0000115>An RNA assay based on identification of molecules associated with ribosomes. Encompasses all methods whether sequencing-based or array-based, including as ribo-seq, TRAP-seq, polysome-purification.</obo:IAO_0000115>
+        <oboInOwl:hasNarrowSynonym rdf:resource="http://www.ebi.ac.uk/efo/EFO_0008891"/>
+        <oboInOwl:hasNarrowSynonym rdf:resource="http://www.ebi.ac.uk/efo/EFO_0008975"/>
+        <rdfs:label xml:lang="en">Ribosome-associated RNA profiling</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://gemma.msl.ubc.ca/ont/TGEMO:00173 -->
+
+    <owl:Class rdf:about="http://gemma.msl.ubc.ca/ont/TGEMO:00173">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33697"/>
+        <obo:IAO_0000115>RNA that is associated with polysomes. Can be used to annotate samples that emerged from polysome purification, but the method of purification itself is another concept.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">polysome-associated RNA</rdfs:label>
+        <rdfs:seeAlso rdf:resource="http://gemma.msl.ubc.ca/ont/TGEMO:00103"/>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/NCBITaxon_10116 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10116"/>
@@ -1115,5 +1137,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.29.2024-05-13T12:11:03Z) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi -->