Feat/sawfish

docker/sawfish/Dockerfile

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+FROM quay.io/pacbio/pb_wdl_base@sha256:4b889a1f21a6a7fecf18820613cf610103966a93218de772caba126ab70a8e87
+
+LABEL maintainer="Billy Rowell <wrowell@pacb.com>"
+
+ARG IMAGE_NAME
+ENV IMAGE_NAME "${IMAGE_NAME}"
+ARG IMAGE_TAG
+ENV IMAGE_TAG "${IMAGE_TAG}"
+
+ARG SAWFISH_VERSION
+RUN wget https://github.com/PacificBiosciences/sawfish/releases/download/v${SAWFISH_VERSION}/sawfish-v${SAWFISH_VERSION}-x86_64-unknown-linux-gnu.tar.gz && \
+	tar --no-same-owner -zxvf sawfish-v${SAWFISH_VERSION}-x86_64-unknown-linux-gnu.tar.gz --directory /opt && \
+	rm sawfish-v${SAWFISH_VERSION}-x86_64-unknown-linux-gnu.tar.gz
+RUN ln -s /opt/sawfish-v${SAWFISH_VERSION}-x86_64-unknown-linux-gnu/bin/sawfish /usr/local/bin/ && \
+	chmod +x /usr/local/bin/sawfish

docker/sawfish/build.env

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+# Image revision
+IMAGE_BUILD=1
+
+# Tool versions
+SAWFISH_VERSION=0.12.5
+
+# Image info
+IMAGE_NAME=sawfish
+IMAGE_TAG=${SAWFISH_VERSION}_build${IMAGE_BUILD}