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Merge branch 'develop-v2'
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williamrowell committed Nov 11, 2024
2 parents 15e7f1a + 21e9355 commit 0aba3fb
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8 changes: 4 additions & 4 deletions README.md
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Expand Up @@ -24,18 +24,18 @@ Both workflows are designed to analyze human PacBio whole genome sequencing (WGS

This is an actively developed workflow with multiple versioned releases, and we make use of git submodules for common tasks that are shared by multiple workflows. There are two ways to ensure you are using a supported release of the workflow and ensure that the submodules are correctly initialized:

1) Download the release zips directly from a [supported release](https://github.com/PacificBiosciences/HiFi-human-WGS-WDL/releases/tag/v2.0.1):
1) Download the release zips directly from a [supported release](https://github.com/PacificBiosciences/HiFi-human-WGS-WDL/releases/tag/v2.0.2):

```bash
wget https://github.com/PacificBiosciences/HiFi-human-WGS-WDL/releases/download/v2.0.1/hifi-human-wgs-singleton.zip
wget https://github.com/PacificBiosciences/HiFi-human-WGS-WDL/releases/download/v2.0.1/hifi-human-wgs-family.zip
wget https://github.com/PacificBiosciences/HiFi-human-WGS-WDL/releases/download/v2.0.2/hifi-human-wgs-singleton.zip
wget https://github.com/PacificBiosciences/HiFi-human-WGS-WDL/releases/download/v2.0.2/hifi-human-wgs-family.zip
```

2) Clone the repository and initialize the submodules:

```bash
git clone \
--depth 1 --branch v2.0.1 \
--depth 1 --branch v2.0.2 \
--recursive \
https://github.com/PacificBiosciences/HiFi-human-WGS-WDL.git
```
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2 changes: 1 addition & 1 deletion image_manifest.txt
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Expand Up @@ -11,7 +11,7 @@ quay.io/pacbio/pb_wdl_base@sha256:4b889a1f21a6a7fecf18820613cf610103966a93218de7
quay.io/pacbio/slivar@sha256:f71a27f756e2d69ec30949cbea97c54abbafde757562a98ef965f21a28aa8eaa
quay.io/pacbio/svpack@sha256:628e9851e425ed8044a907d33de04043d1ef02d4d2b2667cf2e9a389bb011eba
quay.io/pacbio/trgt@sha256:0284ff5756f8d47d9d81b515b8b1a6c81fac862ae5a7b4fe89f65235c3e5e0c9
quay.io/pacbio/wgs_tertiary@sha256:abc0f04b2cf73aaa920f7b5a898972f04cce1b901acb980f7fb6a453e7e8e7c8
quay.io/pacbio/wgs_tertiary@sha256:410597030e0c85cf16eb27a877d260e7e2824747f5e8b05566a1aaa729d71136
google/deepvariant:1.6.1
google/deepvariant:1.6.1-gpu
pgkb/pharmcat:2.15.4
2 changes: 1 addition & 1 deletion wiki
Submodule wiki updated from f1caa2 to e8281e
2 changes: 1 addition & 1 deletion workflows/wdl-common

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