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[WIP] Str counts #37

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[WIP] Str counts #37

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Commits on Oct 1, 2018

  1. calculate number of reads on decoy within identify_locus, STR_counts … 

    …stage no longer required. Additional functionality commented out
    @hdashnow
    hdashnow committed Oct 1, 2018
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  2. Generate max estimated allele size by allocating both-in-pair on deco… 

    …y reads. Use locuscoverage only for stats
    @hdashnow
    hdashnow committed Oct 1, 2018
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  3. limit the number of decimal points reported in the final STRetch results

    @hdashnow
    hdashnow committed Oct 1, 2018
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  4. update test data reference output file for Travis

    @hdashnow
    hdashnow committed Oct 1, 2018
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Commits on Oct 23, 2018

  1. set sample name differently depending on number of underscores in the… 

    … fastq filename
    @hdashnow
    hdashnow committed Oct 23, 2018
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Commits on Feb 14, 2019

  1. report in STRetch output: locuscoverage_log, total_assigned_log, geno… 

    …mecov
    @hdashnow
    hdashnow committed Feb 14, 2019
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