update test data reference output file for Travis

.testing/STRs.benchmark.tsv

@@ -1,6 +1,6 @@
-chrom	start	end	sample	repeatunit	reflen	locuscoverage	outlier	p_adj	bpInsertion	repeatUnits
-chr13	70713515	70713561	11	AGC	15.3	35	1.88685648944145	0.0295898153640992	316.950118548597	120.950039516199
-chr13	70713515	70713561	69	AGC	15.3	8	0.4297790752454	0.333678177749521	76.1210174457791	40.6736724819264
-chr13	70713515	70713561	1	AGC	15.3	3	-0.426744171073212	0.665217162914456	32.9115187238725	26.2705062412908
-chr13	70713515	70713561	54	AGC	15.3	2	-0.730726313557163	0.7675268301731	24.4403744973217	23.4467914991072
-chr13	70713515	70713561	49	AGC	15.3	1	-1.15916508005647	0.876805548823274	16.0677184130193	20.6559061376731
+chrom	start	end	sample	repeatunit	reflen	locuscoverage	total_assigned	outlier	p_adj	bpInsertion	repeatUnits	repeatUnits_max
+chr13	70713515	70713561	11_L001_R1	AGC	15.3	35	52.0	1.9	0.03	317.0	121.0	172.9
+chr13	70713515	70713561	69_L001_R1	AGC	15.3	8	8.0	0.4	0.33	76.1	40.7	40.7
+chr13	70713515	70713561	1_L001_R1	AGC	15.3	3	3.0	-0.4	0.67	32.9	26.3	26.3
+chr13	70713515	70713561	54_L001_R1	AGC	15.3	2	2.0	-0.7	0.77	24.4	23.4	23.4
+chr13	70713515	70713561	49_L001_R1	AGC	15.3	1	1.0	-1.2	0.88	16.1	20.7	20.7

.travis.yml

@@ -11,6 +11,7 @@ script:
 # Run the test data
 - ../tools/bin/bpipe run ../pipelines/STRetch_exome_pipeline.groovy ../test-data/*.fastq.gz
 - if diff STRs.tsv ../.testing/STRs.benchmark.tsv; then echo exit 0; else echo exit 1; fi
+#- diff STRs.tsv ../.testing/STRs.benchmark.tsv
 after_script:
 - head *.locus_counts *.STR_counts *.median_cov
 - head *.tsv