Merge pull request ezpaarse-project#846 from OCLC-Developer-Network/cob

develop parser cob
OCLC-Developer-Network · Aug 19, 2024 · 1774cd1 · 1774cd1
2 parents be3528e + 348b81e
commit 1774cd1
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diff --git a/cob/manifest.json b/cob/manifest.json
@@ -0,0 +1,14 @@
+{
+  "longname": "Company of Biologists",
+  "name": "cob",
+  "describe": "Recognizes the accesses to the platform Company of Biologists",
+  "contact": "Violita Kovchegov",
+  "pkb": false,
+  "docurl": "https://analyses.ezpaarse.org/platforms/66ba68ae318b257026852114",
+  "domains": [
+    "journals.biologists.com",
+    "journals-biologists-com.manchester.idm.oclc.org"
+  ],
+  "version": "2024-08-15",
+  "status": "beta"
+}
diff --git a/cob/parser.js b/cob/parser.js
@@ -0,0 +1,83 @@
+#!/usr/bin/env node
+
+'use strict';
+const Parser = require('../.lib/parser.js');
+
+/**
+ * Recognizes the accesses to the platform Company of Biologists
+ * @param  {Object} parsedUrl an object representing the URL to analyze
+ *                            main attributes: pathname, query, hostname
+ * @param  {Object} ec        an object representing the EC whose URL is being analyzed
+ * @return {Object} the result
+ */
+module.exports = new Parser(function analyseEC(parsedUrl, ec) {
+  let result = {};
+  let path   = parsedUrl.pathname;
+  // uncomment this line if you need parameters
+  let param = parsedUrl.query || {};
+
+  // use console.error for debuging
+  // console.error(parsedUrl);
+
+  let match;
+
+  if (/^\/[a-zA-Z0-9]+\/search-results$/i.test(path)) {
+    // https://journals.biologists.com/jcs/search-results?page=1&q=Pathogens&fl_SiteID=1000007
+    // https://journals.biologists.com/jeb/search-results?page=1&q=Mapping&fl_SiteID=1000009
+    // https://journals.biologists.com/dmm/search-results?page=1&q=Macrophages&fl_SiteID=1000003
+    // https://journals.biologists.com/bio/search-results?page=1&q=stimuli&fl_SiteID=1000001
+    // https://journals.biologists.com/journals/search-results?page=1&q=Mapping&fl_SiteID=3&allJournals=1
+    result.rtype    = 'SEARCH';
+    result.mime     = 'HTML';
+
+  } else if ((match = /^\/Toolbox\/DownloadCombinedArticleAndSupplmentPdf$/i.exec(path)) !== null && param.resourceId !== undefined && param.pdfUrl !== undefined) {
+    // https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=361490&multimediaId=3558762&pdfUrl=/cob/content_public/journal/bio/13/8/10.1242_bio.060205/2/bio060205.pdf
+    // https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=361492&multimediaId=3558644&pdfUrl=/cob/content_public/journal/dmm/17/8/10.1242_dmm.050693/2/dmm050693.pdf
+    // https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=224739&multimediaId=3511707&pdfUrl=/cob/content_public/journal/jcs/133/1/10.1242_jcs.236489/5/jcs236489.pdf
+    // https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=361243&multimediaId=3555465&pdfUrl=/cob/content_public/journal/jeb/227/14/10.1242_jeb.247419/1/jeb247419.pdf
+    // https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=361248&multimediaId=3555541&pdfUrl=/cob/content_public/journal/jeb/227/14/10.1242_jeb.247043/1/jeb247043.pdf
+    result.rtype    = 'SUPPL';
+    result.mime     = 'PDF';
+    let temp = param.pdfUrl.split('/');
+    result.db_id    = temp[4];
+    result.issue    = temp[6];
+    result.vol      = temp[5];
+    result.unitid   = param.resourceId;
+
+  } else if ((match = /^\/[a-zA-Z]+\/article-pdf\/([0-9]+)\/([0-9]+)\/([a-zA-Z0-9]+)\/([0-9]+)\/([a-zA-Z0-9]+).pdf$/i.exec(path)) !== null) {
+    // https://journals.biologists.com/bio/article-pdf/13/8/bio060543/3560201/bio060543.pdf
+    // https://journals.biologists.com/dmm/article-pdf/17/8/dmm050693/3558644/dmm050693.pdf
+    // https://journals.biologists.com/jeb/article-pdf/227/14/jeb247043/3555541/jeb247043.pdf
+    // https://journals.biologists.com/jcs/article-pdf/137/14/jcs262042/3555318/jcs262042.pdf
+    // https://journals.biologists.com/jcs/article-pdf/137/14/jcs261532/3555571/jcs261532.pdf
+    result.rtype    = 'ARTICLE';
+    result.mime     = 'PDF';
+    result.issue    = match[2];
+    result.vol      = match[1];
+    result.unitid   = `${match[1]}/${match[2]}/${match[3]}/${match[4]}/${match[5]}.pdf`;
+
+  } else if ((match = /^\/[a-zA-Z]+\/article\/([0-9]+)\/([0-9]+)\/([a-zA-Z0-9]+)\/([0-9]+)\/([a-zA-Z0-9-]+)$/i.exec(path)) !== null) {
+    // https://journals.biologists.com/bio/article/13/8/bio060543/361624/A-fast-fish-swimming-protocol-that-provides
+    // https://journals.biologists.com/dmm/article/17/8/dmm050693/361492/Macrophages-directly-kill-bladder-cancer-cells
+    // https://journals.biologists.com/jeb/article/227/14/jeb247043/361248/Ice-in-the-intertidal-patterns-and-processes-of
+    // https://journals.biologists.com/jcs/article/137/14/jcs262042/361233/Simple-prerequisite-of-presequence-for
+    // https://journals.biologists.com/jcs/article/137/14/jcs261532/361251/Tetraspanin-proteins-in-membrane-remodeling
+    result.rtype    = 'ARTICLE';
+    result.mime     = 'HTML';
+    result.title_id = match[5];
+    result.issue    = match[2];
+    result.vol      = match[1];
+    result.unitid   = `${match[1]}/${match[2]}/${match[3]}/${match[4]}/${match[5]}`;
+
+  } else if ((match = /^\/[a-zA-Z]+\/issue\/([0-9]+)\/([0-9]+)$/i.exec(path)) !== null) {
+    // https://journals.biologists.com/jcs/issue/137/14
+    result.rtype    = 'ISSUE';
+    result.mime     = 'HTML';
+    result.issue    = match[2];
+    result.vol      = match[1];
+    result.unitid   = `${match[1]}/${match[2]}`;
+
+  }
+
+  return result;
+});
diff --git a/cob/test/cob.2024-08-15.csv b/cob/test/cob.2024-08-15.csv
@@ -0,0 +1,22 @@
+out-db_id;out-title_id;out-issue;out-vol;out-unitid;out-rtype;out-mime;in-url
+;;14;137;137/14;ISSUE;HTML;https://journals.biologists.com/jcs/issue/137/14
+;Tetraspanin-proteins-in-membrane-remodeling;14;137;137/14/jcs261532/361251/Tetraspanin-proteins-in-membrane-remodeling;ARTICLE;HTML;https://journals.biologists.com/jcs/article/137/14/jcs261532/361251/Tetraspanin-proteins-in-membrane-remodeling
+;;14;137;137/14/jcs261532/3555571/jcs261532.pdf;ARTICLE;PDF;https://journals.biologists.com/jcs/article-pdf/137/14/jcs261532/3555571/jcs261532.pdf
+;Simple-prerequisite-of-presequence-for;14;137;137/14/jcs262042/361233/Simple-prerequisite-of-presequence-for;ARTICLE;HTML;https://journals.biologists.com/jcs/article/137/14/jcs262042/361233/Simple-prerequisite-of-presequence-for
+;;14;137;137/14/jcs262042/3555318/jcs262042.pdf;ARTICLE;PDF;https://journals.biologists.com/jcs/article-pdf/137/14/jcs262042/3555318/jcs262042.pdf
+;Ice-in-the-intertidal-patterns-and-processes-of;14;227;227/14/jeb247043/361248/Ice-in-the-intertidal-patterns-and-processes-of;ARTICLE;HTML;https://journals.biologists.com/jeb/article/227/14/jeb247043/361248/Ice-in-the-intertidal-patterns-and-processes-of
+;;14;227;227/14/jeb247043/3555541/jeb247043.pdf;ARTICLE;PDF;https://journals.biologists.com/jeb/article-pdf/227/14/jeb247043/3555541/jeb247043.pdf
+jeb;;14;227;361248;SUPPL;PDF;https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=361248&multimediaId=3555541&pdfUrl=/cob/content_public/journal/jeb/227/14/10.1242_jeb.247043/1/jeb247043.pdf
+jeb;;14;227;361243;SUPPL;PDF;https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=361243&multimediaId=3555465&pdfUrl=/cob/content_public/journal/jeb/227/14/10.1242_jeb.247419/1/jeb247419.pdf
+jcs;;1;133;224739;SUPPL;PDF;https://journals-biologists-com.manchester.idm.oclc.org/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=224739&multimediaId=3511707&pdfUrl=/cob/content_public/journal/jcs/133/1/10.1242_jcs.236489/5/jcs236489.pdf
+;Macrophages-directly-kill-bladder-cancer-cells;8;17;17/8/dmm050693/361492/Macrophages-directly-kill-bladder-cancer-cells;ARTICLE;HTML;https://journals.biologists.com/dmm/article/17/8/dmm050693/361492/Macrophages-directly-kill-bladder-cancer-cells
+;;8;17;17/8/dmm050693/3558644/dmm050693.pdf;ARTICLE;PDF;https://journals.biologists.com/dmm/article-pdf/17/8/dmm050693/3558644/dmm050693.pdf
+dmm;;8;17;361492;SUPPL;PDF;https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=361492&multimediaId=3558644&pdfUrl=/cob/content_public/journal/dmm/17/8/10.1242_dmm.050693/2/dmm050693.pdf
+;A-fast-fish-swimming-protocol-that-provides;8;13;13/8/bio060543/361624/A-fast-fish-swimming-protocol-that-provides;ARTICLE;HTML;https://journals.biologists.com/bio/article/13/8/bio060543/361624/A-fast-fish-swimming-protocol-that-provides
+;;8;13;13/8/bio060543/3560201/bio060543.pdf;ARTICLE;PDF;https://journals.biologists.com/bio/article-pdf/13/8/bio060543/3560201/bio060543.pdf
+bio;;8;13;361490;SUPPL;PDF;https://journals.biologists.com/Toolbox/DownloadCombinedArticleAndSupplmentPdf?resourceId=361490&multimediaId=3558762&pdfUrl=/cob/content_public/journal/bio/13/8/10.1242_bio.060205/2/bio060205.pdf
+;;;;;SEARCH;HTML;https://journals.biologists.com/jcs/search-results?page=1&q=Pathogens&fl_SiteID=1000007
+;;;;;SEARCH;HTML;https://journals.biologists.com/jeb/search-results?page=1&q=Mapping&fl_SiteID=1000009
+;;;;;SEARCH;HTML;https://journals.biologists.com/dmm/search-results?page=1&q=Macrophages&fl_SiteID=1000003
+;;;;;SEARCH;HTML;https://journals.biologists.com/bio/search-results?page=1&q=stimuli&fl_SiteID=1000001
+;;;;;SEARCH;HTML;https://journals.biologists.com/journals/search-results?page=1&q=Mapping&fl_SiteID=3&allJournals=1