fix(create-unbranched-groups): number in segment group id cannot be n…

…egative

neuroml/nml/helper_methods.py

@@ -2193,7 +2193,8 @@ def create_unbranched_segment_group_branches(self, root_segment_id: int, use_con
 
         # initialise root segment and first segment group
         seg = self.get_segment(root_segment_id)
-        group_name = f"seg_group_{len(self.morphology.segment_groups) - 1}_seg_{seg.id}"
+        num_seg_groups = len(self.morphology.segment_groups)
+        group_name = f"seg_group_{num_seg_groups}_seg_{seg.id}"
         new_seg_group = self.add_unbranched_segment_group(group_name)
 
         # run recursive function

neuroml/nml/nml.py

@@ -2,8 +2,8 @@
 # -*- coding: utf-8 -*-
 
 #
-# Generated Tue Jun 11 14:00:16 2024 by generateDS.py version 2.43.3.
-# Python 3.10.9 (main, Jan 11 2023, 15:21:40) [GCC 11.2.0]
+# Generated Wed Aug 14 13:56:38 2024 by generateDS.py version 2.44.1.
+# Python 3.11.9 (main, Apr 17 2024, 00:00:00) [GCC 14.0.1 20240411 (Red Hat 14.0.1-0)]
 #
 # Command line options:
 #   ('-o', 'nml.py')
@@ -16,7 +16,7 @@
 #   NeuroML_v2.3.1.xsd
 #
 # Command line:
-#   /home/padraig/anaconda2/envs/py310//bin/generateDS -o "nml.py" --use-getter-setter="none" --user-methods="helper_methods.py" --export="write validate" --custom-imports-template="gds_imports-template.py" NeuroML_v2.3.1.xsd
+#   /home/asinha/.local/share/virtualenvs/neuroml-311-dev/bin/generateDS -o "nml.py" --use-getter-setter="none" --user-methods="helper_methods.py" --export="write validate" --custom-imports-template="gds_imports-template.py" NeuroML_v2.3.1.xsd
 #
 # Current working directory (os.getcwd()):
 #   nml
@@ -198,7 +198,7 @@ class GeneratedsSuperSuper(object):
 
     class GeneratedsSuper(GeneratedsSuperSuper):
         __hash__ = object.__hash__
-        tzoff_pattern = re_.compile(r"(\+|-)((0\d|1[0-3]):[0-5]\d|14:00)$")
+        tzoff_pattern = re_.compile("(\\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00)$")
 
         class _FixedOffsetTZ(datetime_.tzinfo):
             def __init__(self, offset, name):
@@ -704,7 +704,7 @@ def get_path_(self, node):
             path = "/".join(path_list)
             return path
 
-        Tag_strip_pattern_ = re_.compile(r"\{.*\}")
+        Tag_strip_pattern_ = re_.compile(r"{.*}")
 
         def get_path_list_(self, node, path_list):
             if node is None:
@@ -49780,7 +49780,8 @@ def create_unbranched_segment_group_branches(
 
         # initialise root segment and first segment group
         seg = self.get_segment(root_segment_id)
-        group_name = f"seg_group_{len(self.morphology.segment_groups) - 1}_seg_{seg.id}"
+        num_seg_groups = len(self.morphology.segment_groups)
+        group_name = f"seg_group_{num_seg_groups}_seg_{seg.id}"
         new_seg_group = self.add_unbranched_segment_group(group_name)
 
         # run recursive function