coverage reports for pytest calls where it makes sense possibly #13
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| name: create_test_conda_env | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '>=3.9' | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an env var pointing to root of miniconda dir | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Create fre-workflows environment | |
| run: | | |
| # create environment containing all dependencies | |
| # the env cannot be explicitly activated in github CI/CD | |
| conda env create -f environment.yml --name fre-workflows | |
| # add conda env's executables to github's PATH equiv. | |
| echo $CONDA/envs/fre-workflows/bin >> $GITHUB_PATH | |
| - name: Run unittest in fre-workflows environment | |
| run: | | |
| # try to make sure the right things are in GITHUB_PATH | |
| echo $CONDA/envs/fre-workflows/bin >> $GITHUB_PATH | |
| # lint .cylc workflow files | |
| cylc lint -v || echo "cylc lint threw non-zero exit code" | |
| # unittests for data_lineage | |
| cd data_lineage && \ | |
| python -m unittest discover -s test -v || \ | |
| echo "data_lineage unittest failed."; \ | |
| pylint -v || \ | |
| echo "pylint threw non-zero exit code."; \ | |
| cd -; | |
| # pytest unittests for regrid-xy | |
| cd app/regrid-xy && \ | |
| pytest -v -v -rx --cov=regrid_xy ./t || \ | |
| echo "pytest unittests for regrid-xy failed"; \ | |
| pylint -v || \ | |
| echo "pylint threw non-zero exit code."; \ | |
| cd -; | |
| # pytest unittests for make-timeseries | |
| cd app/make-timeseries && \ | |
| pytest -v -v -rx --cov=bin/make-timeseries ./test || \ | |
| echo "pytest for make-timeseries failed"; \ | |
| pylint -v || \ | |
| echo "pylint threw non-zero exit code."; \ | |
| cd -; | |
| # pytest unittests for remap-pp-components | |
| cd app/remap-pp-components && \ | |
| pytest -v -v -rx --cov=bin/remap-pp-components ./t/ || \ | |
| echo "pytest for remap-pp-components failed"; \ | |
| pylint -v || \ | |
| echo "pylint threw non-zero exit code."; \ | |
| cd -; | |
| # pytest unittests for other things in this repository | |
| pytest -v -v -rx ./tests || \ | |
| echo "pytest unittests for root directory failed :-("; |