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render with updated fpi wetland chapter
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Anders Kolstad committed Oct 13, 2023
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102 changes: 51 additions & 51 deletions docs/Functional-plant-indicators-open.html

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98 changes: 49 additions & 49 deletions docs/Functional-plant-indicators-seminat.html

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Expand Up @@ -81,8 +81,8 @@ <h1>
<li><a class="" href="median-summer-temp.html"><span class="header-section-number">4</span> Median Summer Temperature</a></li>
<li><a class="" href="alien-species.html"><span class="header-section-number">5</span> Alien species</a></li>
<li><a class="" href="Functional-plant-indicators-wetland.html"><span class="header-section-number">6</span> Functional Plant Indicators - Wetlands</a></li>
<li><a class="" href="Functional-plant-indicators-seminat.html"><span class="header-section-number">7</span> Functional Plant Indicators - Semi-Natural Ecosystems</a></li>
<li><a class="" href="Functional-plant-indicators-open.html"><span class="header-section-number">8</span> Functional Plant Indicators - Naturally Open Ecosystems</a></li>
<li><a class="" href="functional-plant-indicators-seminat.html"><span class="header-section-number">7</span> Functional Plant Indicators - Semi-Natural Ecosystems</a></li>
<li><a class="" href="functional-plant-indicators-open.html"><span class="header-section-number">8</span> Functional Plant Indicators - Naturally Open Ecosystems</a></li>
<li><a class="" href="trophic-level-biomass-ratios.html"><span class="header-section-number">9</span> Trophic level biomass ratios</a></li>
<li><a class="" href="insect-indicators.html"><span class="header-section-number">10</span> Insect indicators</a></li>
<li class="book-part">R &amp; D</li>
Expand Down Expand Up @@ -151,7 +151,7 @@ <h4>
</h4>
<p>Data is downloaded from <a href="https://kartkatalog.miljodirektoratet.no/Dataset/Details/2054">here</a>.</p>
<p>Import and list terms:</p>
<div class="sourceCode" id="cb567"><pre class="downlit sourceCode r">
<div class="sourceCode" id="cb571"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">ano</span> <span class="op">&lt;-</span> <span class="fu">sf</span><span class="fu">::</span><span class="fu"><a href="https://r-spatial.github.io/sf/reference/st_read.html">st_read</a></span><span class="op">(</span><span class="st">"/data/P-Prosjekter2/41201785_okologisk_tilstand_2022_2023/data/Naturovervaking_eksport.gdb"</span>,</span>
<span> layer <span class="op">=</span> <span class="st">"ANO_SurveyPoint"</span><span class="op">)</span></span>
<span><span class="co">#&gt; Reading layer `ANO_SurveyPoint' from data source </span></span>
Expand Down Expand Up @@ -237,12 +237,12 @@ <h4>
<span><span class="co">#&gt; [71] "editdate" </span></span>
<span><span class="co">#&gt; [72] "SHAPE"</span></span></code></pre></div>
<p>Table of the number of sampling points per year:</p>
<div class="sourceCode" id="cb568"><pre class="downlit sourceCode r">
<div class="sourceCode" id="cb572"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/table.html">table</a></span><span class="op">(</span><span class="va">ano</span><span class="op">$</span><span class="va">aar</span><span class="op">)</span></span>
<span><span class="co">#&gt; </span></span>
<span><span class="co">#&gt; 2019 2020 2021 </span></span>
<span><span class="co">#&gt; 1111 3411 4452</span></span></code></pre></div>
<div class="sourceCode" id="cb569"><pre class="downlit sourceCode r">
<div class="sourceCode" id="cb573"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/par.html">par</a></span><span class="op">(</span>mar<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/c.html">c</a></span><span class="op">(</span><span class="fl">15</span>,<span class="fl">5</span>,<span class="fl">0</span>,<span class="fl">0</span><span class="op">)</span><span class="op">)</span></span>
<span><span class="fu"><a href="https://rdrr.io/r/graphics/barplot.html">barplot</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/table.html">table</a></span><span class="op">(</span><span class="va">ano</span><span class="op">$</span><span class="va">hovedoekosystem_punkt</span><span class="op">)</span>, las<span class="op">=</span><span class="fl">2</span><span class="op">)</span></span></code></pre></div>
<div class="figure">
Expand All @@ -252,11 +252,11 @@ <h4>
</p>
</div>
<p>Sub-setting the data to only consider seni natural areas.</p>
<div class="sourceCode" id="cb570"><pre class="downlit sourceCode r">
<div class="sourceCode" id="cb574"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">snat</span> <span class="op">&lt;-</span> <span class="va">ano</span><span class="op">[</span><span class="va">ano</span><span class="op">$</span><span class="va">hovedoekosystem_punkt</span> <span class="op">==</span> <span class="st">"semi_naturlig_mark"</span>,<span class="op">]</span></span>
<span><span class="va">snat2</span> <span class="op">&lt;-</span> <span class="va">snat</span><span class="op">[</span><span class="op">!</span><span class="fu"><a href="https://rdrr.io/r/base/NA.html">is.na</a></span><span class="op">(</span><span class="va">snat</span><span class="op">$</span><span class="va">GlobalID</span><span class="op">)</span>,<span class="op">]</span></span></code></pre></div>
<p>230 points are semi-natural.</p>
<div class="sourceCode" id="cb571"><pre class="downlit sourceCode r">
<div class="sourceCode" id="cb575"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/table.html">table</a></span><span class="op">(</span><span class="va">snat</span><span class="op">$</span><span class="va">hovedtype_1m2</span><span class="op">)</span></span>
<span><span class="co">#&gt; </span></span>
<span><span class="co">#&gt; Åpen jordvannsmyr Boreal hei </span></span>
Expand All @@ -272,7 +272,7 @@ <h4>
<span><span class="co">#&gt; Skogsmark </span></span>
<span><span class="co">#&gt; 4</span></span></code></pre></div>
<p>Only 49 1m2 samples are kystlynghei.</p>
<div class="sourceCode" id="cb572"><pre class="downlit sourceCode r">
<div class="sourceCode" id="cb576"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/table.html">table</a></span><span class="op">(</span><span class="va">ano</span><span class="op">$</span><span class="va">hovedtype_250m2</span><span class="op">)</span></span>
<span><span class="co">#&gt; </span></span>
<span><span class="co">#&gt; Åker </span></span>
Expand Down Expand Up @@ -402,7 +402,7 @@ <h2>
<footer class="bg-primary text-light mt-5"><div class="container"><div class="row">

<div class="col-12 col-md-6 mt-3">
<p>"<strong>Indicators for Ecosystem Condition in Norway</strong>" was written by Anders L. Kolstad. It was last built on 2023-10-05.</p>
<p>"<strong>Indicators for Ecosystem Condition in Norway</strong>" was written by Anders L. Kolstad. It was last built on 2023-10-13.</p>
</div>

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