Add ability to explore various values of AED and LD. #109
Workflow file for this run
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name: Continuous Integration | |
# Controls when the action will run. Triggers the workflow on push or pull request | |
# events but only for the master branch, or add_actions branch | |
on: | |
push: | |
branches: [ master, add_actions ] | |
pull_request: | |
branches: [ master, add_actions ] | |
jobs: | |
test_workflow: | |
runs-on: ubuntu-latest | |
env: | |
NXF_ANSI_LOG: false | |
strategy: | |
matrix: | |
NXF_VER: | |
- "22.10.1" | |
- "latest" | |
profile: | |
- docker | |
workflow: | |
- 'abinitio_training' | |
- 'annotation_preprocessing' | |
- 'functional_annotation' | |
- 'transcript_assembly' | |
# Steps represent a sequence of tasks that will be executed as part of the job | |
steps: | |
# https://github.com/marketplace/actions/checkout | |
- name: Check out repository code | |
uses: actions/checkout@v4 | |
# https://github.com/marketplace/actions/setup-nextflow | |
- name: Install Nextflow | |
uses: nf-core/setup-nextflow@v1 | |
with: | |
version: "${{ matrix.NXF_VER }}" | |
- name: Test ${{ matrix.workflow }} with profile ${{ matrix.profile }} | |
run: nextflow run -profile test,${{ matrix.profile }} main.nf --subworkflow ${{ matrix.workflow }} |