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Add ability to explore various values of AED and LD. #108

Add ability to explore various values of AED and LD.

Add ability to explore various values of AED and LD. #108

name: Continuous Integration
# Controls when the action will run. Triggers the workflow on push or pull request
# events but only for the master branch, or add_actions branch
on:
push:
branches: [ master, add_actions ]
pull_request:
branches: [ master, add_actions ]
jobs:
test_workflow:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
strategy:
matrix:
NXF_VER:
- "22.10.1"
- "latest"
profile:
- docker
workflow:
- 'abinitio_training'
- 'annotation_preprocessing'
- 'functional_annotation'
- 'transcript_assembly'
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# https://github.com/marketplace/actions/checkout
- name: Check out repository code
uses: actions/checkout@v4
# https://github.com/marketplace/actions/setup-nextflow
- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
with:
version: "${{ matrix.NXF_VER }}"
- name: Test ${{ matrix.workflow }} with profile ${{ matrix.profile }}
run: nextflow run -profile test,${{ matrix.profile }} main.nf --subworkflow ${{ matrix.workflow }}