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update to reflect latest changes
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@Juke34
Juke34 committed Sep 12, 2024
1 parent 35ef0c9 commit a6dc183
Showing 1 changed file with 74 additions and 12 deletions.
86 changes: 74 additions & 12 deletions t/scripts_output/out/agat_sp_statistics_1.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,8 @@ Number of chromosome 1
Number chromosome overlapping 0
Total chromosome length (bp) 43270923
mean chromosome length (bp) 43270923
median chromosome length (bp) 43270923
90 percentile chromosome length (bp) na
Longest chromosome (bp) 43270923
Shortest chromosome (bp) 43270923

Expand All @@ -13,6 +15,8 @@ Number of repeat_region 2
Number repeat_region overlapping 0
Total repeat_region length (bp) 202
mean repeat_region length (bp) 101
median repeat_region length (bp) 101
90 percentile repeat_region length (bp) na
Longest repeat_region (bp) 101
Shortest repeat_region (bp) 101

Expand Down Expand Up @@ -58,18 +62,44 @@ Total intron length per exon (bp) 89816
Total intron length per five_prime_utr (bp) 11235
Total intron length per three_prime_utr (bp) 794
mean gene length (bp) 3054
mean mrna length (bp) 3045
mean cds length (bp) 1088
mean mrna length (bp) 3046
mean cds length (bp) 1089
mean exon length (bp) 339
mean five_prime_utr length (bp) 196
mean three_prime_utr length (bp) 419
mean three_prime_utr length (bp) 420
mean cds piece length (bp) 240
mean five_prime_utr piece length (bp) 149
mean three_prime_utr piece length (bp) 365
mean three_prime_utr piece length (bp) 366
mean intron in cds length (bp) 344
mean intron in exon length (bp) 353
mean intron in exon length (bp) 354
mean intron in five_prime_utr length (bp) 591
mean intron in three_prime_utr length (bp) 88
median gene length (bp) 2540
median mrna length (bp) 2484
median cds length (bp) 128
median exon length (bp) 165
median five_prime_utr length (bp) 78
median three_prime_utr length (bp) 245
median cds piece length (bp) 128
median five_prime_utr piece length (bp) 78
median three_prime_utr piece length (bp) 245
median intron in cds length (bp) 133
median intron in exon length (bp) 129
median intron in five_prime_utr length (bp) 123
median intron in three_prime_utr length (bp) 79
90 percentile gene length (bp) 5514
90 percentile mrna length (bp) 5514
90 percentile cds length (bp) 521
90 percentile exon length (bp) 818
90 percentile five_prime_utr length (bp) 379
90 percentile three_prime_utr length (bp) 691
90 percentile cds piece length (bp) 521
90 percentile five_prime_utr piece length (bp)379
90 percentile three_prime_utr piece length (bp)691
90 percentile intron in cds length (bp) 791
90 percentile intron in exon length (bp) 770
90 percentile intron in five_prime_utr length (bp)3593
90 percentile intron in three_prime_utr length (bp)na
Longest gene (bp) 8045
Longest mrna (bp) 8045
Longest cds (bp) 2937
Expand Down Expand Up @@ -136,18 +166,44 @@ Total intron length per exon (bp) 72649
Total intron length per five_prime_utr (bp) 11112
Total intron length per three_prime_utr (bp) 794
mean gene length (bp) 3054
mean mrna length (bp) 2996
mean mrna length (bp) 2997
mean cds length (bp) 1054
mean exon length (bp) 319
mean five_prime_utr length (bp) 220
mean three_prime_utr length (bp) 373
mean cds piece length (bp) 231
mean exon length (bp) 320
mean five_prime_utr length (bp) 221
mean three_prime_utr length (bp) 374
mean cds piece length (bp) 232
mean five_prime_utr piece length (bp) 159
mean three_prime_utr piece length (bp) 314
mean intron in cds length (bp) 335
mean three_prime_utr piece length (bp) 315
mean intron in cds length (bp) 336
mean intron in exon length (bp) 349
mean intron in five_prime_utr length (bp) 617
mean intron in three_prime_utr length (bp) 88
median gene length (bp) 2540
median mrna length (bp) 2468
median cds length (bp) 125
median exon length (bp) 160
median five_prime_utr length (bp) 87
median three_prime_utr length (bp) 235
median cds piece length (bp) 125
median five_prime_utr piece length (bp) 87
median three_prime_utr piece length (bp) 235
median intron in cds length (bp) 133
median intron in exon length (bp) 127
median intron in five_prime_utr length (bp) 123
median intron in three_prime_utr length (bp) 79
90 percentile gene length (bp) 5514
90 percentile mrna length (bp) 5514
90 percentile cds length (bp) 514
90 percentile exon length (bp) 701
90 percentile five_prime_utr length (bp) 371
90 percentile three_prime_utr length (bp) 646
90 percentile cds piece length (bp) 514
90 percentile five_prime_utr piece length (bp)371
90 percentile three_prime_utr piece length (bp)646
90 percentile intron in cds length (bp) 770
90 percentile intron in exon length (bp) 770
90 percentile intron in five_prime_utr length (bp)3593
90 percentile intron in three_prime_utr length (bp)na
Longest gene (bp) 8045
Longest mrna (bp) 7833
Longest cds (bp) 2937
Expand Down Expand Up @@ -186,6 +242,12 @@ Total exon length (bp) 81
mean ncrna_gene length (bp) 81
mean trna length (bp) 81
mean exon length (bp) 81
median ncrna_gene length (bp) 81
median trna length (bp) 81
median exon length (bp) 81
90 percentile ncrna_gene length (bp) na
90 percentile trna length (bp) na
90 percentile exon length (bp) na
Longest ncrna_gene (bp) 81
Longest trna (bp) 81
Longest exon (bp) 81
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