I'm a PhD student at the University of Turin, Italy in the Complex Systems for Life Sciences program. My PhD is focused on the role of transporters in the physiology of cancer.
I'm very interested in Data Stewardship, FAIR data and in particular FAIR Orchestration.
I'm an author and the maintainer for (almost) all packages in my laboratory's organization.
If you want to learn more about me, take a look at my ABOUT page. It contains more information on what I do, as well as my Curriculum Vitae and publication lists.
I really like collaborating with others. If you want to collaborate, check the CONTRIBUTING files in the repository for the project you want to contribute to, or contact me directly!
I administrate bioinfo.ds, a bioniformatics-centered community on Discord.
All my contact information lives in my linktree. I strive to keep it up-to-date!
This is a (possibly incomplete) list of my finished, abandoned (π) and current (π§) projects. I look at this when I want to feel good about myself.
- Kerblam! and Kerblam usage examples: a Rust tool / project management system that makes your life easier when dealing with data analysis.
- Metasplit: a Python tool to break up (large) CSV files column-wise based on an external metadata file.
- Panid: a Python tool to convert between different IDs (e.g. ensembl, HGNC, etc...).
- Fast Cohen's D: a small Rust tool to calculate Cohen's D.
- BioTEA: a containerized Python tool to analysi microarray expression.
- π§ The Data Stewardship Knowledgebase: an aggregator of links related to data stewardship, open science and data management in general.
- π§ Mimir: a policy to handle data for a research group with little resources in a FAIR way.
- A tiny guide to Make, which converts to this website.
- The code for my blog, which you can read here.
- π The Data Myr specification, the precursor to Mimir.
- Programming notes some notes and exercises on the usage of R.
- The Membrane Transport Protein database, a database of transporters.
- ICT-Bib, a database of papers about transporters.
- Bonsai a Python library to handle Tree like data structures. It's very easy to use.
- π§ Transportome Profiler, the main analysis of my PhD thesis.
- π§ Data analysis project structure: an analysis on the structure of data analysis projects.
- Turin author network: an analysis of the co-authorship network between the authors of the university of Turin.
- Code used in my Master thesis.
- A Typst paper template to jumpstart paper writing in Typst.
- A Latex paper template to jumpstart paper writing in Latex.
- π§ Code of the paper for Kerblam!
- My dotfiles
- Milton: my Discord bot.
- π Chip 8 implementation in Rust (which does not really work).