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Updae the labs to have the correct time label
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kdorheim committed Feb 7, 2024
1 parent 2d50b44 commit f8ee009
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Showing 12 changed files with 13 additions and 7 deletions.
1 change: 0 additions & 1 deletion DESCRIPTION
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Expand Up @@ -22,7 +22,6 @@ Suggests:
Imports:
assertthat (>= 0.2.1),
deSolve (>= 1.30),
magrittr (>= 2.0.1),
FME (>= 1.3.6.2)
RoxygenNote: 7.2.3
VignetteBuilder: knitr
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4 changes: 3 additions & 1 deletion README.Rmd
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Expand Up @@ -74,6 +74,7 @@ ggplot(data = mend_out) +
geom_line(aes(time, value, color = name), linewidth = 0.75) +
facet_wrap("variable", scales = "free") +
labs(y = "mg C/g soil",
x = "time (hour)"
title = "MEND Run Results")
```

Expand Down Expand Up @@ -108,7 +109,8 @@ ggplot(data = rbind(mend_out, my_out)) +
geom_line(aes(time, value, color = name), linewidth = 0.75) +
facet_wrap("variable", scales = "free") +
labs(y = "mg C/g soil",
title = "Comparing Model Results") +
title = "Comparing Model Results",
x = "time (hour)") +
theme(legend.title = element_blank())
```

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2 changes: 2 additions & 0 deletions README.md
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Expand Up @@ -137,6 +137,8 @@ ggplot(data = mend_out) +
geom_line(aes(time, value, color = name), linewidth = 0.75) +
facet_wrap("variable", scales = "free") +
labs(y = "mg C/g soil",
x = "time (hour)"

title = "MEND Run Results")
```

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Binary file added vignettes/FutureDynamics.png
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4 changes: 3 additions & 1 deletion vignettes/MEMC.Rmd
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Expand Up @@ -73,6 +73,7 @@ ggplot(data = mend_out) +
geom_line(aes(time, value, color = name), linewidth = 0.75) +
facet_wrap("variable", scales = "free") +
labs(y = "mg C/g soil",
x = "time (hour)",
title = "MEND Run Results")
```

Expand Down Expand Up @@ -124,7 +125,8 @@ ggplot(data = rbind(mend_out, my_out)) +
geom_line(aes(time, value, color = name), linewidth = 0.75) +
facet_wrap("variable", scales = "free") +
labs(y = "mg C/g soil",
title = "Comparing Model Results") +
title = "Comparing Model Results",
x = "time (hour)") +
theme(legend.title = element_blank())
```

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2 changes: 1 addition & 1 deletion vignettes/articles/Fit-to-Data.Rmd
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Expand Up @@ -88,7 +88,7 @@ ggplot(data = out[out$variable == "IC", ]) +
geom_line(aes(time, value, color = par)) +
geom_point(data = comp_data, aes(time, IC)) +
facet_wrap("variable", scales = "free") +
labs(x = "Time", y = "mg C/g soil", title = "MIMCS")
labs(x = "Time (hour)", y = "mg C/g soil", title = "MIMCS")
```

2 changes: 1 addition & 1 deletion vignettes/articles/ModelComparison.Rmd
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Expand Up @@ -55,6 +55,6 @@ Visualize results!
ggplot(data = out) +
geom_line(aes(x = time, y = value, color = name), linewidth = 1, alpha = 0.85) +
facet_wrap("variable", scales = "free") +
labs(x = "Time", y = "mg C/g", title = "MEMC Model Comparison") +
labs(x = "Time (hour)", y = "mg C/g", title = "MEMC Model Comparison") +
scale_color_manual(values = MEMC::colorMEMCPalette())
```
5 changes: 3 additions & 2 deletions vignettes/articles/sens.Rmd
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Expand Up @@ -178,6 +178,7 @@ ggplot(data = out) +
geom_line(aes(time, Mean, color = name)) +
facet_wrap("variable", scales = "free") +
labs(y = "mg C/g soil",
x = "Time (hour)",
title = "Global Sensitivity to Vd, Vp & Vm",
subtitle = "q25/q75") +
theme(legend.title = element_blank()) +
Expand Down Expand Up @@ -208,15 +209,15 @@ CORPSEsens_out <- memc_sensfunc(config = CORPSE_model,
Format output and visualize the results.
```{r}
out <- rbind(cbind(format_sensout(CORPSEsens_out), name = "CORPSE"),
cbind(format_sensout(MENDsens_out), name = "MEND"))
cbind(format_sensout(MENDsens_out), name = "MEND"))
```

```{r, fig.width=8}
ggplot(data = out) +
geom_line(aes(time, value, color = name)) +
facet_wrap("parameter", scales = "free") +
labs(title = "Local Senstivity to DOM",
x = "Time", y = "" )
x = "Time (hour)", y = "" )
```


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Binary file added vignettes/som_diversity.png
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