GitHub - Max-Tomlinson/Nanopore-benchmarking

Scripts for benchmarking whole blood long-read sequencing data against known annotations

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
1.1 Study characteristics.R		1.1 Study characteristics.R
2.1 Summary info.R		2.1 Summary info.R
2.2 FastQ Screen.R		2.2 FastQ Screen.R
2.3 NanoComp.R		2.3 NanoComp.R
2.4 Full-length transcripts.R		2.4 Full-length transcripts.R
2.5 CollectRnaSeqMetrics.R		2.5 CollectRnaSeqMetrics.R
2.6 Biotype.R		2.6 Biotype.R
3.1 GffCompare.R		3.1 GffCompare.R
3.2 Exons per transcript.R		3.2 Exons per transcript.R
3.3 GffCompare2.R		3.3 GffCompare2.R
3.4 Upset.R		3.4 Upset.R
3.5 Predictions.R		3.5 Predictions.R
4.1 SQANTI3.R		4.1 SQANTI3.R
5.1 Dimensionality reduction.R		5.1 Dimensionality reduction.R
5.2 Differential expression.R		5.2 Differential expression.R
5.3 Short-read analysis.R		5.3 Short-read analysis.R
5.4 DESeq2.R		5.4 DESeq2.R
5.5 DEXSeq.R		5.5 DEXSeq.R
5.6 DRIMSeq.R		5.6 DRIMSeq.R
5.7 IsoformSwitchAnalyzeR.R		5.7 IsoformSwitchAnalyzeR.R
FilterGTF.R		FilterGTF.R
README.md		README.md
dCell.R		dCell.R

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