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Issues: MatthewRalston/kmerdb

README 2.0
#137 opened Apr 6, 2024 by MatthewRalston
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28 Open 81 Closed
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Issues list

Graph node labeling and traversal update bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#153 opened Aug 12, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
Kolmogorov complexity bug Something isn't working documentation Improvements or additions to documentation invalid This doesn't seem right
#152 opened Aug 12, 2024 by MatthewRalston Suitable for academic use
@MatthewRalston
Notes on mouse ibd documentation Improvements or additions to documentation duplicate This issue or pull request already exists invalid This doesn't seem right
#151 opened Aug 12, 2024 by MatthewRalston Suitable for academic use
@MatthewRalston
Profile recomposition problem bug Something isn't working enhancement New feature or request help wanted Extra attention is needed invalid This doesn't seem right wontfix This will not be worked on
#150 opened Aug 12, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
2
Quarto template an app. note dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists enhancement New feature or request invalid This doesn't seem right question Further information is requested
#149 opened Aug 4, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
.kdbg format and variants bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#143 opened Jul 14, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
4
Expectation functions bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request question Further information is requested
#142 opened Jul 13, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
1
D2 metrics bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists enhancement New feature or request question Further information is requested
#141 opened Jul 13, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
Tetranucleotide bias and Karlin delta bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request question Further information is requested wontfix This will not be worked on
#140 opened Jul 13, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
README 2.0 enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right wontfix This will not be worked on
#137 opened Apr 6, 2024 by MatthewRalston Interface Revision
@MatthewRalston
2
Kmer.shred always returns sparse kmer_id/count array documentation Improvements or additions to documentation
#134 opened Apr 4, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
2
stderr logging and interface cleanup bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation enhancement New feature or request question Further information is requested
#132 opened Mar 31, 2024 by MatthewRalston Interface Revision
1
@MatthewRalston
2
vsearch conda package dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation enhancement New feature or request
#131 opened Mar 29, 2024 by MatthewRalston edge list tuple
@MatthewRalston
1
Expanded row metadata for graph format dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists enhancement New feature or request good first issue Good for newcomers invalid This doesn't seem right
#130 opened Mar 29, 2024 by MatthewRalston V0.7 stable?
3
still no dl bug Something isn't working duplicate This issue or pull request already exists help wanted Extra attention is needed invalid This doesn't seem right
#125 opened Mar 7, 2024 by MatthewRalston edge list tuple
@MatthewRalston
3
Assert subsequent shredded kmers are neighborly, skip if fails (fastq centered) bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists enhancement New feature or request good first issue Good for newcomers question Further information is requested
#123 opened Mar 5, 2024 by MatthewRalston
1
@MatthewRalston
7
Maybe take a walk? bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed question Further information is requested wontfix This will not be worked on
#122 opened Feb 20, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
4
__init__.py --all-metadata has print statement when not --quiet doesn print to stderr the metadata for debugging. bug Something isn't working invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#118 opened Feb 3, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
__init__.py has duplicate storage of kmerid [smell] bug Something isn't working enhancement New feature or request good first issue Good for newcomers invalid This doesn't seem right wontfix This will not be worked on
#114 opened Feb 3, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
kmerdb profile sort order returns improperly sorted col2, col3 bug Something isn't working good first issue Good for newcomers invalid This doesn't seem right
#113 opened Feb 3, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
twizza project template
#112 opened Jul 13, 2023 by MatthewRalston
Fixing documentation bug Something isn't working documentation Improvements or additions to documentation invalid This doesn't seem right
#102 opened Dec 28, 2022 by MatthewRalston v0.7.2 stable, PyPI downloads
@MatthewRalston
Not ready for dls enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#101 opened Dec 28, 2022 by MatthewRalston V0.7 stable?
@MatthewRalston
No module named kmerdb in the bin script from pyproject.toml's entry_point. bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right
#97 opened Dec 27, 2022 by MatthewRalston v0.7.2 stable, PyPI downloads
@MatthewRalston
5
Maximum choice of k wrt NumPy array limitations
#96 opened Dec 6, 2022 by MatthewRalston
ProTip! Adding no:label will show everything without a label.