hotfix matplotlib get_cmap

MICS-Lab · May 22, 2024 · 3a338b4 · 3a338b4
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,7 @@
+## [1.6.2] - 2024-05-22
+
+Hotfix: use get_cmap from matplotlib.pyplot (#35)
+
 ## [1.6.1] - 2024-04-08
 
 Rename `correct_spillover` -> `compensate`

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "scyan"
-version = "1.6.1"
+version = "1.6.2"
 description = "Single-cell Cytometry Annotation Network"
 documentation = "https://mics-lab.github.io/scyan/"
 homepage = "https://mics-lab.github.io/scyan/"

diff --git a/scyan/plot/_scanpy_plot/umap.py b/scyan/plot/_scanpy_plot/umap.py
@@ -16,7 +16,6 @@
 from matplotlib import pyplot as pl
 from matplotlib import rcParams
 from matplotlib.axes import Axes
-from matplotlib.cm import get_cmap
 from matplotlib.collections import PatchCollection
 from matplotlib.colors import Colormap, Normalize, is_color_like
 from matplotlib.figure import Figure
@@ -323,7 +322,7 @@ def scanpy_pl_umap(
             raise ValueError("Cannot specify both `color_map` and `cmap`.")
         else:
             cmap = color_map
-    cmap = copy(get_cmap(cmap))
+    cmap = copy(pl.get_cmap(cmap))
     cmap.set_bad(na_color)
     kwargs["cmap"] = cmap
     # Prevents warnings during legend creation