output cpm scaling factor into log file

LiuLabUB · Sep 11, 2019 · b28bf8c · b28bf8c
1 parent 2f7b0e7
commit b28bf8c
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/src/HMMR_ATAC/Main_HMMR_Driver.java b/src/HMMR_ATAC/Main_HMMR_Driver.java
@@ -271,6 +271,7 @@ public static void main(String[] args) throws IOException {
 
 		//calculate the cpm scaling factor for input into FragPileupGen. Use cpmScale=1 for no scaling
 		double cpmScale = pileupData.getCPMScale()/1000000;
+		log.println("ScalingFactor\t"+cpmScale);
 
 		pileupData = null;