Add ImageJ outputs to the ExperimentHub metadata for the Visium LS data

inst/extdata/metadata_Visium_LS.csv

@@ -1,3 +1,4 @@
 Title,Description,BiocVersion,Genome,SourceType,SourceUrl,SourceVersion,Species,TaxonomyId,Coordinate_1_based,DataProvider,Maintainer,RDataClass,DispatchClass,RDataPath,Tags
 Visium_LS_spe,SpatialExperiment object at the spot-level for the spatially stitched lateral septum human brain (LS) spatial transcriptomics data (n = 3) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.,3.19,GRCh38,GTF,https://bioconductor.org/packages/spatialLIBD,June 11 2024,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <lcolladotor@gmail.com>,SpatialExperiment,Rds,spatialLIBD/spatialLIBD_files/Visium_LS_spe.rds,VisiumLS_Visium_stitched_spatialLIBD
 Visium_LS_spaceranger,Spaceranger outputs for the spatially stitched lateral septum human brain (LS) spatial transcriptomics data (n = 3) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package. Can be used with visiumStitched::build_spe() to construct a SpatialExperiment.,3.19,GRCh38,Zip,https://bioconductor.org/packages/spatialLIBD,June 11 2024,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <lcolladotor@gmail.com>,list,Zip,spatialLIBD/spatialLIBD_files/Visium_LS_spaceranger.zip,VisiumLS_Visium_stitched_spatialLIBD
+Visium_LS_ImageJ_out,Stitched PNG image and XML file from aligning lateral septum human brain (LS) spatial transcriptomics data (n = 3) in ImageJ. Data to align was from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and is available through the spatialLIBD Bioconductor package.,3.19,GRCh38,Zip,https://bioconductor.org/packages/spatialLIBD,June 11 2024,Homo sapiens,9606,TRUE,LIBD,Leonardo Collado-Torres <lcolladotor@gmail.com>,list,Zip,spatialLIBD/spatialLIBD_files/Visium_LS_imagej_out.zip,VisiumLS_Visium_stitched_spatialLIBD

inst/scripts/make-metadata_Visium_LS.R

@@ -6,27 +6,31 @@ outdir <- "spatialLIBD_files"
 pkgname <- "spatialLIBD"
 
 meta = tibble(
-    Title = c("Visium_LS_spe", "Visium_LS_spaceranger"),
+    Title = c("Visium_LS_spe", "Visium_LS_spaceranger", "Visium_LS_ImageJ_out"),
     Description = c(
         "SpatialExperiment object at the spot-level for the spatially stitched lateral septum human brain (LS) spatial transcriptomics data (n = 3) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package.",
-        "Spaceranger outputs for the spatially stitched lateral septum human brain (LS) spatial transcriptomics data (n = 3) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package. Can be used with visiumStitched::build_spe() to construct a SpatialExperiment."
+        "Spaceranger outputs for the spatially stitched lateral septum human brain (LS) spatial transcriptomics data (n = 3) from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and available through the spatialLIBD Bioconductor package. Can be used with visiumStitched::build_spe() to construct a SpatialExperiment.",
+        "Stitched PNG image and XML file from aligning lateral septum human brain (LS) spatial transcriptomics data (n = 3) in ImageJ. Data to align was from the Visium platform from 10x Genomics generated by the Lieber Institute for Brain Development (LIBD) and is available through the spatialLIBD Bioconductor package."
     ),
     BiocVersion = "3.19",
     Genome = "GRCh38",
-    SourceType = c("GTF", "Zip"),
+    SourceType = c("GTF", "Zip", "Zip"),
     SourceUrl = "https://bioconductor.org/packages/spatialLIBD",
     SourceVersion = "June 11 2024",
     Species = "Homo sapiens",
     TaxonomyId = 9606,
     Coordinate_1_based = TRUE,
     DataProvider = "LIBD",
     Maintainer = "Leonardo Collado-Torres <lcolladotor@gmail.com>",
-    RDataClass = c("SpatialExperiment", "list"),
-    DispatchClass = c("Rds", "Zip"),
+    RDataClass = c("SpatialExperiment", "list", "list"),
+    DispatchClass = c("Rds", "Zip", "Zip"),
     RDataPath = file.path(
         pkgname,
         outdir,
-        c("Visium_LS_spe.rds", "Visium_LS_spaceranger.zip")
+        c(
+            "Visium_LS_spe.rds", "Visium_LS_spaceranger.zip",
+            "Visium_LS_imagej_out.zip"
+        )
     ),
     Tags = "VisiumLS_Visium_stitched_spatialLIBD"
 )