A plugin for interactive visualization of Single Molecule Localization Microscopy (SMLM) datasets with Napari. This package uses the (currently experimental) Napari Particles layer developed by Martin Weigert (https://github.com/maweigert).
We recommend instaling Napari into a Conda virtual environment, e.g. using the conda prompt with
conda create --name napari-storm
activate napari-storm
conda install pip
You can install napari-storm by cloning the repository, using, e.g. the conda prompt with:
git clone https://github.com/napari-storm/napari-storm
Next, switch to the install directory and install the python package using
cd napari-storm
pip install -e .
To start the program, simply start the napari version that was just installed into your environment, e.g. again using the conda prompt:
napari
If you encounter any problems, please file an issue along with a detailed description.