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27 Open 51 Closed
27 Open 51 Closed
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Issues list

How does PHATE handle new data? question
#147 opened Nov 9, 2024 by Mr-Byun
Regarding initialization in PHATE question
#146 opened Sep 6, 2024 by JayaniLakshika
What is happening in mds.method = "classic"? question
#145 opened Sep 6, 2024 by JayaniLakshika
Providing init to the phateR implementation only saves up time if only the parameter t is changing but not other parameters? question
#143 opened Apr 16, 2024 by erzakiev
1
Intrinsic dimension of PHATE embedding identifes branches question
#142 opened Mar 28, 2024 by YYT1002
Support more graphs for phate.fit enhancement
#141 opened Dec 9, 2023 by dsm-72
Error: TypeError: __init__() got an unexpected keyword argument 'k' question
#140 opened Sep 22, 2023 by handesome
Cannot import phate: numpy version? bug
#136 opened Apr 22, 2023 by haoqichen20
1
destination is read-only bug
#134 opened Mar 21, 2023 by AndrewSkelton
Application of PHATE to Visium 10x data enhancement
#133 opened Mar 20, 2023 by tyaoi
cell type annotations of EB question
#128 opened Feb 8, 2023 by ShobiStassen
Recommended minimum number of cells to run PHATE? question
#127 opened Jan 29, 2023 by kuang-da
cell-cycle & mitochondrial regression question
#126 opened Jan 4, 2023 by kvshams
2
Adding cell id (input rowname) in PHATE output (Y_phate in python tutorial :EmbryoidBody) enhancement
#121 opened Dec 7, 2022 by parkjooyoung99
Update bioconda enhancement
#120 opened Nov 10, 2022 by dsm-72
1
T-PHATE algorithm question
#115 opened Jun 6, 2022 by apathanasiadis
MDS smacof n_jobs argument bug
#112 opened Mar 3, 2022 by choltz95
1
SVD computation error message bug
#108 opened Jun 10, 2021 by ivan-marroquin
Be able to use minkowski metric with p < 1 enhancement
#107 opened Jun 10, 2021 by ivan-marroquin
2
RE: input data for PHATE question
#105 opened Apr 22, 2021 by vravik
Reproducing Supplementary Figure 13 in paper and general re-weighting procedure question
#99 opened Nov 6, 2020 by jashahir
s_gd2 typeerror bug
#95 opened Jun 30, 2020 by scottgigante
@scottgigante
13
Totally different result between phateR and RunPHATE question
#93 opened Jun 12, 2020 by qiuhuiqq
2
confront problems in using phateR question
#91 opened Apr 13, 2020 by Shawn10312
4
Output is different when n_samples < 100 in MATLAB and R bug
#89 opened Mar 28, 2020 by scottgigante
ProTip! no:milestone will show everything without a milestone.