Merge pull request #632 from IN-CORE/631-fix-github-action-error-in-p… #2255

	name: pytests

	# Runs unit tests on:
	# - any push to any branch
	# - when a PR is opened/reopened - this is just for additional safety and covers the case of main -> develop PRs without new pushes

	on:
	push:
	pull_request:
	types: [opened, reopened]

	jobs:
	unit_test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	vars: [ {python-version: '3.9', sleep: '0s'}, {python-version: '3.10', sleep: '60s'},
	{python-version: '3.11', sleep: '120s'}, {python-version: '3.12', sleep: '180s'} ]
	name: Python ${{ matrix.vars.python-version }} Test
	steps:
	- name: Checkout source code
	uses: actions/checkout@v4

	- name: Cache conda
	uses: actions/cache@v4
	env:
	# Increase this value to reset cache if environment.yml has not changed
	CACHE_NUMBER: 0
	with:
	path: ~/conda_pkgs_dir
	key:
	${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
	hashFiles('environment.yml') }}

	- name: Install micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	create-args: >-
	python=${{ matrix.vars.python-version }}
	pytest
	environment-file: environment.yml
	generate-run-shell: true

	- name: Sleep for ${{ matrix.vars.sleep }} to avoid multiple pytests run concurrently
	uses: jakejarvis/wait-action@master
	with:
	time: ${{ matrix.vars.sleep }}

	- name: Run tests with pytest
	run: \|
	echo "${{secrets.PYTEST_USER_TOKEN}}" > tests/pyincore/.incorepw
	python -m pytest --ignore=tests/test_format.py --ignore=tests/pyincore/analyses
	shell: micromamba-shell {0}

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