Add meeting notes July 10

meeting_notes/2024/20240626_telco.md

@@ -35,7 +35,7 @@ We will prioritize tools based on use cases for the mzQC manuscript and try to e
 
 ## mzQC manuscript
 
-- Current Status: Manuscript contains ideas and structure but requires substantial work.
+- Current status: Manuscript contains ideas and structure but requires substantial work.
 - We discussed the different use cases. Key next efforts will include getting started on those examples.
 
 ## Other
@@ -46,15 +46,15 @@ We will prioritize tools based on use cases for the mzQC manuscript and try to e
 
 - Wout:
     - Finalize the updates for the individual run and multiple run examples.
-    - Recreate the Quameter to MZ QC conversion script.
+    - Recreate the Quameter to mzQC conversion script.
 - Mathias:
     - Ensure the validation setup runs correctly.
     - Update the QC example, focusing on the metabolomics batch correction and QC sample plots.
 - Nils:
     - Double-check the metabolomics example and ensure it adheres to the final specification.
 - Chris:
-    - Add more metrics to PTX QC.
-    - Reach out to OpenMS developers regarding MZ QC support.
+    - Add more metrics to PTX-QC.
+    - Reach out to OpenMS developers regarding mzQC support.
 - Team:
     - Update the GitHub issue tracker with tasks and responsibilities.
     - Collect and track new QC tools and developers for outreach.

meeting_notes/2024/20240710_telco.md

@@ -0,0 +1,29 @@
+# QC working group teleconference 10 July 2024
+
+- Chris Bielow
+- Wout Bittremieux
+- Eralp Dogu
+- David Tabb
+- Julian Uszkoreit
+- Mathias Walzer
+
+---
+
+## mzQC examples
+
+- We went over the updated mzQC examples and had a discussion on related CV requests.
+- Wout will submit new CV requests to complete the [setQuality](https://github.com/HUPO-PSI/mzQC/pull/219) and [mzML](https://github.com/HUPO-PSI/mzQC/pull/228) examples.
+    - MS:4000177|protein contaminant intensity ratio should use the "ratio" unit instead of "fraction".
+- Additional checks need to be added to the validator: [ensure unit consistency](https://github.com/MS-Quality-Hub/pymzqc/issues/42), [input files to recognize ID-based metrics](https://github.com/MS-Quality-Hub/pymzqc/issues/43), [documentation on how to run locally](https://github.com/MS-Quality-Hub/pymzqc/issues/44).
+- The validator seems to be online again but very slow. Mathias will work on validator documentation and coordinate with Nils for stability issues.
+
+## mzQC manuscript
+
+- Eralp joined us for some fresh perspectives on the manuscript and use cases. We especially discussed the longitudinal QC use case. We can use QCloud data or CPTAC data, which Eralp has used previously with MsStatsQC.
+- Eralp and Mathias will coordinate to decide on the best dataset to use for the longitudinal QC use case.
+- Eralp will look into mzQC support for MsStatsQC through rmzqc. Alternately, a simpler first approach could be to use an external conversion script.
+- Wout will create a Python script to convert between QuaMeter output and mzQC.
+
+## Miscellaneous
+
+- Wout & Dave will be present at HUPO 2024 in Dresden.