updated USI example to mzQC v1.0 (#229) #191
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# This workflow will validate the mzQC example files against the JSON schema. | |
name: tests | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
schedule: | |
- cron: "0 0 1 1/1 *" # Run monthly. | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: '3.x' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install jsonschema | |
- name: Validate mzQC files | |
run: | | |
for i in ./specification_documents/examples/*.mz[qQ][cC]; do | |
echo "Syntactic validating of $i" | |
jsonschema -i $i ./schema/mzqc_schema.json | |
if [ $? -ne 0 ]; then | |
echo "Failed to validate $i" | |
exit 1 | |
fi | |
done |