tox setup + env as requirements file

.github/workflows/python-tox.yml

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+name: Test notebooks
+
+on:
+  - push
+  - pull_request
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.12"]
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install tox tox-gh-actions
+    - name: Test notebooks with tox
+      run: tox -e testnb

requirements_test.txt

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+appdirs==1.4.4
+appnope==0.1.4
+asttokens==2.4.1
+attrs==23.2.0
+beautifulsoup4==4.12.3
+branca==0.7.1
+certifi==2024.2.2
+charset-normalizer==3.3.2
+click==8.1.7
+cmdstanpy==1.2.2
+comm==0.2.2
+contourpy==1.2.1
+cycler==0.12.1
+debugpy==1.8.1
+decorator==5.1.1
+et-xmlfile==1.1.0
+executing==2.0.1
+fastjsonschema==2.19.1
+folium==0.16.0
+fonttools==4.51.0
+frozendict==2.4.2
+gensim==4.3.2
+gurobi-machinelearning==1.5.0
+gurobipy==11.0.1
+gurobipy-pandas==1.1.1
+holidays==0.47
+html5lib==1.1
+idna==3.7
+importlib_resources==6.4.0
+iniconfig==2.0.0
+ipykernel==6.29.4
+ipython==8.23.0
+ipywidgets==8.1.2
+jedi==0.19.1
+Jinja2==3.1.3
+joblib==1.4.0
+jsonschema==4.21.1
+jsonschema-specifications==2023.12.1
+jupyter_client==8.6.1
+jupyter_core==5.7.2
+jupyterlab_widgets==3.0.10
+kiwisolver==1.4.5
+lightfm==1.17
+lxml==5.2.1
+MarkupSafe==2.1.5
+matplotlib==3.8.4
+matplotlib-inline==0.1.7
+multitasking==0.0.11
+names==0.3.0
+nbclient==0.6.8
+nbformat==5.10.4
+nest-asyncio==1.6.0
+networkx==3.3
+nltk==3.8.1
+numpy==1.26.4
+openpyxl==3.1.2
+packaging==24.0
+pandas==2.2.2
+parso==0.8.4
+patsy==0.5.6
+peewee==3.17.3
+pexpect==4.9.0
+pillow==10.3.0
+platformdirs==4.2.1
+plotly==5.21.0
+pluggy==1.5.0
+prompt-toolkit==3.0.43
+prophet==1.1.5
+psutil==5.9.8
+ptyprocess==0.7.0
+pure-eval==0.2.2
+pydot==2.0.0
+Pygments==2.17.2
+pyparsing==3.1.2
+python-dateutil==2.9.0.post0
+pytz==2024.1
+pyzmq==26.0.2
+referencing==0.35.0
+regex==2024.4.16
+requests==2.31.0
+rpds-py==0.18.0
+scikit-learn==1.4.2
+scipy==1.12.0
+seaborn==0.13.2
+six==1.16.0
+smart-open==7.0.4
+soupsieve==2.5
+stack-data==0.6.3
+stanio==0.5.0
+statsmodels==0.14.2
+tenacity==8.2.3
+threadpoolctl==3.4.0
+tornado==6.4
+tqdm==4.66.2
+traitlets==5.14.3
+typing_extensions==4.11.0
+tzdata==2024.1
+urllib3==2.2.1
+wcwidth==0.2.13
+webencodings==0.5.1
+widgetsnbextension==4.0.10
+wordcloud==1.9.3
+wrapt==1.16.0
+xgboost==2.0.3
+xyzservices==2024.4.0
+yfinance==0.2.38

tox.ini

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+# in multiple virtualenvs. This configuration file will run the
+# test suite on all supported python versions. To use it, "pip install tox"
+# and then run "tox" from this directory.
+
+[tox]
+envlist = testnb
+isolated_build = True
+
+[gh-actions]
+python =
+    3.12: py312
+
+[testenv:testnb]
+deps =
+    pytest
+    nbmake
+    -rrequirements_test.txt
+commands =
+    python -m pip install --upgrade pip setuptools wheel
+    pytest --nbmake --nbmake-kernel=python3 --nbmake-timeout=2000 \
+        ./3d_tic_tac_toe/3d_tic_tac_toe.ipynb \
+        ./agricultural_pricing/agricultural_pricing.ipynb \
+        ./aviation_planning/airlineplanning.ipynb \
+        ./burrito_optimization_game/burrito_optimization_game.ipynb \
+        ./car_rental/car_rental_1.ipynb \
+        ./car_rental/car_rental_2.ipynb \
+        ./cell_tower_coverage/cell_tower.ipynb \
+        ./colgen-cutting_stock/colgen-cutting_stock.ipynb \
+        ./constraint_optimization/constraint_optimization.ipynb \
+        ./covid19_facility_location/covid19_facility_location.ipynb \
+        ./curve_fitting/curve_fitting.ipynb \
+        ./customer_assignment/customer_assignment.ipynb \
+        ./decentralization_planning/decentralization_planning.ipynb \
+        ./drone_network/drone_network.ipynb \
+        ./economic_planning/economic_planning.ipynb \
+        ./efficiency_analysis/efficiency_analysis.ipynb \
+        ./electrical_power_generation/electrical_power_1.ipynb \
+        ./electrical_power_generation/electrical_power_2.ipynb \
+        ./facility_location/facility_location.ipynb \
+        ./factory_planning/factory_planning_1.ipynb \
+        ./factory_planning/factory_planning_2.ipynb \
+        ./fantasy_basketball/fantasy_basketball_part1.ipynb \
+        ./fantasy_basketball/fantasy_basketball_part2.ipynb \
+        ./farm_planning/farm_planning.ipynb \
+        ./food_manufacturing/food_manufacture_1.ipynb \
+        ./food_manufacturing/food_manufacture_2.ipynb \
+        ./gurobi_days_digital_2023/intro_to_gurobipy/intro_to_gurobipy.ipynb \
+        ./linear_regression/l0_regression.ipynb \
+        ./logical_design/logical_design.ipynb \
+        ./lost_luggage_distribution/lost_luggage_distribution.ipynb \
+        ./manpower_planning/manpower_planning.ipynb \
+        ./market_sharing/market_sharing.ipynb \
+        ./marketing_campaign_optimization/marketing_campaign_optimization.ipynb \
+        ./milk_collection/milk_collection.ipynb \
+        ./milp_tutorial/introduction_to_modeling.ipynb \
+        ./milp_tutorial/milp_tutorial_RAP_problem_001.ipynb \
+        ./milp_tutorial/milp_tutorial_RAP_problem_002.ipynb \
+        ./milp_tutorial/milp_tutorial_RAP_problem_003.ipynb \
+        ./mining/mining.ipynb \
+        ./music_recommendation/music_recommendation.ipynb \
+        ./offshore_wind_farming/offshore_wind_farming.ipynb \
+        ./opencast_mining/opencast_mining.ipynb \
+        ./optimization101/Modeling_Session_1/completed_modeling1.ipynb \
+        ./optimization101/Modeling_Session_2/completed_Exercise_Set2.ipynb \
+        ./optimization101/Modeling_Session_2/completed_modeling2.ipynb \
+        ./optimization101/Modeling_Session_2/energy_storage_ML.ipynb \
+        ./optimization201/Modeling_Session_1/completed_modeling1.ipynb \
+        ./optimization201/Modeling_Session_2/completed_modeling2.ipynb \
+        ./optimization201/technician_assignment/resource_assignment_complete.ipynb \
+        ./optimization201/technician_assignment/technician_routing.ipynb \
+        ./pooling/std_pooling.ipynb \
+        ./portfolio_selection_optimization/portfolio_selection_optimization.ipynb \
+        ./power_generation/optimize_power_schedule.ipynb \
+        ./price_optimization/price_optimization.ipynb \
+        ./price_optimization/price_optimization_gurobiML.ipynb \
+        ./pricing_competing_products/generate_data.ipynb \
+        ./pricing_competing_products/price_optimization_with_competing_products.ipynb \
+        ./protein_comparison/protein_comparison.ipynb \
+        ./protein_folding/protein_folding.ipynb \
+        ./refinery/refinery.ipynb \
+        ./supply_network_design/supply_network_design_1.ipynb \
+        ./supply_network_design/supply_network_design_2.ipynb \
+        ./technician_routing_scheduling/technician_routing_scheduling.ipynb \
+        ./text_dissimilarity/text_dissimilarity.ipynb \
+        ./traveling_salesman/tsp.ipynb \
+        ./workforce/workforce_scheduling.ipynb \
+        ./yield_management/yield_management.ipynb