Merge pull request #22 from GrossfieldLab/conda-only-build

Conda only build

.gitignore

@@ -141,6 +141,10 @@ Tools/coverlap
 Tools/subsetter
 Tools/xy_rdf
 Tools/model-select
+Packages/Clustering/**
+!Packages/Clustering/*.cpp
+!Packages/Clustering/*.hpp
+!packages/Clustering/SConscript
 Packages/ElasticNetworks/heavy-ca
 Packages/ElasticNetworks/psf-masses
 Packages/ElasticNetworks/vsa

.travis.yml

@@ -25,6 +25,7 @@ addons:
      - doxygen
      - graphviz
      - scons
+     - libeigen3-dev
 
 before_install:
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update          ; fi
@@ -34,5 +35,6 @@ before_install:
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install doxygen; fi
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install graphviz; fi
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install scons; fi
+  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew install eigen; fi
 
 script: scons

ChangeLog

@@ -1,7 +1,20 @@
+2019-12-19  Alan Grossfield <alan>
+	* Release 3.1 New build system
+	* New Clustering package
+	* Bug fix to omg.py and it's handling of internal waters
+	* Added rotation options to solvate.py
+	* Fixed bug in omg and solvate where salt missed atom names
+	* fullhelper.py tool to simplify writing fullhelp messages
+	* New tool: packing_score_per_res.py
+	* Precision option to RMSD computing tools
+	* make_library.py: new tool to make a lipid library
+	* add_molecules.py: packmol-like tool to scatter small molecules in a box
+	* updates to cluster-structures.py: more output information
+
 2019-02-27  Alan Grossfield <alan>
 	* Release of LOOS 3.0.  This is a major change, in that LOOS now
 	  requires Python 3.x.
-	  
+
 2019-01-21  Alan Grossfield <alan>
 	* Merged in a new reweighting framework.  Added a new options class to
 	  support it, and implemented it in rdf and xy_rdf as examples.