more cleanup

cool_seq_tool/mappers/mane_transcript.py

@@ -1038,7 +1038,7 @@ async def grch38_to_mane_p(
     ) -> Optional[Dict]:
         """Given genomic representation, return protein representation.
         Will try MANE Select
-        :param ac: Genomic RefSeq accession on GRCh38
+        :param alt_ac: Genomic RefSeq accession on GRCh38
         :param start_pos: Start position
         :param end_pos: End position
         :param gene: HGNC gene symbol
@@ -1047,8 +1047,8 @@ async def grch38_to_mane_p(
         :param try_longest_compatible: `True` if should try longest compatible remaining
             if mane transcript(s) not compatible. `False` otherwise.
         :return: If successful, return MANE data or longest compatible remaining (if
-            `try_longest_compatible` set to `True`). Will return inter-residue
-            coordinates.
+            `try_longest_compatible` set to `True`) protein representation. Will return
+            inter-residue coordinates.
         """
         # Step 1: Get MANE data to map to
         if gene:
@@ -1058,8 +1058,7 @@ async def grch38_to_mane_p(
                 alt_ac, start_pos, end_pos
             )
 
-        len_mane_data = len(mane_data)
-        if not len_mane_data and not try_longest_compatible:
+        if not mane_data and not try_longest_compatible:
             return None
 
         # Step 2: Get inter-residue position

tests/mappers/test_mane_transcript.py

@@ -781,7 +781,7 @@ async def test_grch38_to_mane_p(test_mane_transcript, mybpc3_s236g):
         "refseq": "NP_001265045.1",
         "ensembl": "ENSP00000359077.1",
         "pos": (239, 258),
-        "status": TranscriptPriority.MANE_PLUS_CLINICAL,
+        "status": TranscriptPriority.MANE_SELECT,
         "strand": "-",
         "gene": "L1CAM",
     }