fix: return type for FeatureOverlap get_grch38_mane_gene_cds_overlap

GenomicMedLab · Nov 7, 2023 · 67a241c · 67a241c
1 parent 05bbb3c
commit 67a241c
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Showing 2 changed files with 3 additions and 9 deletions.
diff --git a/cool_seq_tool/data_sources/feature_overlap.py b/cool_seq_tool/data_sources/feature_overlap.py
@@ -1,7 +1,7 @@
 """Module for getting feature (gene/exon) overlap"""
 import re
 from pathlib import Path
-from typing import Dict, Optional
+from typing import Dict, Optional, List
 
 import pandas as pd
 from ga4gh.core import ga4gh_identify
@@ -124,7 +124,7 @@ def get_grch38_mane_gene_cds_overlap(
         chromosome: Optional[str] = None,
         identifier: Optional[str] = None,
         residue_mode: ResidueMode = ResidueMode.RESIDUE,
-    ) -> Optional[Dict[str, CdsOverlap]]:
+    ) -> Optional[Dict[str, List[CdsOverlap]]]:
         """Given GRCh38 genomic data, find the overlapping MANE features (gene and cds).
         The genomic data is specified as a sequence location by `chromosome`, `start`,
         `end`. All CDS regions with which the input sequence location has nonzero base
@@ -145,12 +145,6 @@ def get_grch38_mane_gene_cds_overlap(
             dictionary will be keyed by genes which overlap the input sequence location.
             Each gene contains a list of the overlapping CDS regions with the beginning
             and end of the input sequence location's overlap with each
-            {
-                gene: {
-                    'cds': VRS Sequence Location
-                    'overlap': VRS Sequence Location
-                }
-            }
         """
         ga4gh_seq_id = None
         if chromosome:

diff --git a/cool_seq_tool/version.py b/cool_seq_tool/version.py
@@ -1 +1 @@
-__version__ = "0.1.14-dev2"
+__version__ = "0.1.14-dev3"