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GavinHaLab

Cancer Genomics and Computational Biology Lab at Fred Hutch

21 followers
FRED HUTCHINSON CANCER RESEARCH CENTER
https://gavinhalab.org
@gavinha

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ichorCNA ichorCNA Public

Forked from broadinstitute/ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

R 14 10
Griffin Griffin Public

Forked from adoebley/Griffin

A flexible framework for nucleosome profiling of cell-free DNA

Python 6 4
TitanCNA_SV_WGS TitanCNA_SV_WGS Public

R 1 1

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All JavaScript Jupyter Notebook Python R Shell WDL

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Showing 10 of 28 repositories

ichorCNA_WDL Public
Has Dockerfile and WDL pipeline for ichorCNA

GavinHaLab/ichorCNA_WDL’s past year of commit activity

WDL 1 BSD-3-Clause-Clear 0 0 0 Updated Nov 27, 2024
ichorCNA Public Forked from broadinstitute/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

GavinHaLab/ichorCNA’s past year of commit activity

R 14 GPL-3.0 90 11 0 Updated Nov 22, 2024
GavinHaLab.github.io Public
Gavin Ha Lab Website

GavinHaLab/GavinHaLab.github.io’s past year of commit activity

JavaScript 1 0 0 3 Updated Nov 15, 2024
crpc-sv-pattern-study Public

GavinHaLab/crpc-sv-pattern-study’s past year of commit activity

R 2 3 0 0 Updated Nov 14, 2024
fastq_to_bam_paired_snakemake Public Forked from annahoge/fastq_to_bam_paired_snakemake
A snakemake to convert paired fastq files to analysis-ready bams, following GATK best practices.

GavinHaLab/fastq_to_bam_paired_snakemake’s past year of commit activity

Python 1 4 0 0 Updated Oct 3, 2024
PEARL Public

GavinHaLab/PEARL’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Sep 30, 2024
TitanCNA_SV_WGS Public

GavinHaLab/TitanCNA_SV_WGS’s past year of commit activity

R 1 MIT 1 0 2 Updated Sep 3, 2024
Keraon Public Forked from denniepatton/Keraon
A tool for estimating heterogenous phenotype fractions from ctDNA features

GavinHaLab/Keraon’s past year of commit activity

Python 1 2 0 0 Updated Jun 6, 2024
CDK12-CRPC-paper Public

GavinHaLab/CDK12-CRPC-paper’s past year of commit activity

R 0 BSD-3-Clause-Clear 0 0 0 Updated May 28, 2024
CRPCSubtypingPaper Public
Analysis code used in ctDNA CRPC phenotype manuscript

GavinHaLab/CRPCSubtypingPaper’s past year of commit activity

Python 2 1 2 0 Updated May 24, 2024

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