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_pkgdown.yml
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_pkgdown.yml
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url: https://franciscrickinstitute.github.io/chronogram/
template:
bootstrap: 5
reference:
- title: Assemble a chronogram & add data
desc:
- contents:
- cg_assemble
- starts_with("cg_add")
- title: Annotate a chronogram
desc:
- subtitle: Episode annotation
desc: Find episodes from results (tests, symptoms) on different calendar days
- contents:
- cg_annotate_episodes_find
- cg_annotate_episodes_find_seroconversion
- cg_annotate_episodes_fill
- subtitle: Episode, vaccine & exposure counting
- contents:
- cg_annotate_episodes_count
- cg_annotate_vaccines_count
- cg_annotate_exposures_count
- cg_annotate_antigenic_history
- title: Filter, window & select a chronogram
- contents:
- starts_with("cg_window")
- starts_with("cg_select")
- title: IO
desc: Save and load a chronogram
- contents:
- cg_save
- cg_load
- title: Example datasets
- contents:
- smallstudy
- built_smallstudy
- pitch_chronogram
- title: Plots
desc: Visualise chronogram using `ggplot2`
- contents:
- contains("plot")
- title: chronogram class
desc: S3 constructor, helper and validator functions
- contents:
- chronogram
- chronogram_skeleton
- contains("new")
- contains("check")
- contains("validate")
- title: Extending dplyr, tibble
- contents:
- contains("dplyr")
- contains("group_")
- contains("ungroup")
- contains("print")
- contains("glimpse")
navbar:
structure:
right: [search, github, lightswitch]
components:
articles:
text: Articles
menu:
- text: Assembly
- text: Chronogram assembly
href: articles/assembly.html
- text: Assembly from SQL
href: articles/SQL_assembly.html
- text: -------
- text: Annotation
- text: Annotate vaccines
href: articles/annotate_vaccines.html
- text: Annotate infection episodes
href: articles/annotate_episodes.html
- text: Annotate exposures
href: articles/annotate_exposure.html
- text: -------
- text: Analysis
- text: Chronogram statistics
href: articles/stats.html
- text: -------
- text: Chronogram class
- text: Introducing the chronogram class
href: articles/chronogram_class.html
- text: -------
- text: Extras
- text: Symptom diaries
href: articles/symptoms_diary.html