Add paper #191
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| name: PR Test | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| run-tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] #, macos-latest, windows-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: '3.7' | |
| steps: | |
| - name: Cancel Workflow Action | |
| uses: styfle/cancel-workflow-action@0.6.0 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: Set up conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: spectral_connectivity | |
| environment-file: environment.yml | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| - name: Install spectral_connectivity | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| pytest --cov=spectral_connectivity tests/ --cov-report lcov | |
| - name: Coveralls | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: coverage.lcov | |
| - name: Test notebooks | |
| shell: bash -l {0} | |
| run: | | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute examples/Tutorial_On_Simulated_Examples.ipynb | |
| jupyter nbconvert --to notebook --ExecutePreprocessor.kernel_name=python3 --execute examples/Tutorial_Using_Paper_Examples.ipynb |