v1.1.7

• bug fixes
  • catch exit code correctly in a bash pipe
  • glob idr_log corretly
  • fix broken URIs for DX in documentation
  • fix WDL parse error
  • fix for missing matplotlib module error in conda env
  • removed ENTRYPOINT from Dockerfile for AWS backend
• others
  • added bwa mem for PE dataset (experimental)
  • added count signal track
  • sync with atac, chip-nexus
  • added parameter chip.use_filt_pe_ta_for_xcor
  • added support for .fastq file
• update docs
  • better description for outputs in output.md
  • update for SCG (using moduled miniconda/3)

Conda users must update pipeline's Conda environments.

$ bash conda/update_conda_env.sh