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{2023.06}[foss/2023b] GROMACS 2024.4 #815

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merged 2 commits into from
Nov 27, 2024

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bedroge
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@bedroge bedroge commented Nov 16, 2024

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@bedroge bedroge added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Nov 16, 2024
@riscv-eessi-io-bot
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Instance eessi-bot-riscv is configured to build for:

  • architectures: riscv64/generic
  • repositories: riscv.eessi.io-20240402

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eessi-bot bot commented Nov 16, 2024

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

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eessi-bot bot commented Nov 16, 2024

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software, eessi.io-2023.06-compat

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bedroge commented Nov 16, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4

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riscv-eessi-io-bot bot commented Nov 16, 2024

Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 16, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 16, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/29221

date job status comment
Nov 16 22:07:23 UTC 2024 submitted job id 29221 awaits release by job manager
Nov 16 22:08:05 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:16:08 UTC 2024 running job 29221 is running
Nov 16 23:53:00 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-29221.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1731798083.tar.gzsize: 37 MiB (39117665 bytes)
entries: 769
modules under 2023.06/software/linux/aarch64/generic/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/aarch64/generic/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/aarch64/generic
no other files in tarball
Nov 16 23:53:00 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:aarch64-generic-node+default
P: perf: 10.048 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:aarch64-generic-node+default
P: perf: 10.186 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:aarch64-generic-node+default
P: perf: 10.05 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:aarch64-generic-node+default
P: perf: 698.387 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:aarch64-generic-node+default
P: perf: 700.38 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-generic-node+default
P: latency: 3.23 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-generic-node+default
P: latency: 3.47 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-generic-node+default
P: latency: 5.34 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-generic-node+default
P: latency: 5.32 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-generic-node+default
P: latency: 0.48 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-generic-node+default
P: latency: 0.46 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-generic-node+default
P: bandwidth: 19784.98 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-generic-node+default
P: bandwidth: 19639.21 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-29221.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:37:03 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-aarch64-generic-1731798083.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-azure for CPU micro-architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/2206

date job status comment
Nov 16 22:07:24 UTC 2024 submitted job id 2206 awaits release by job manager
Nov 16 22:07:55 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:12:58 UTC 2024 running job 2206 is running
Nov 17 22:12:25 UTC 2024 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job2206.result does not exist in job directory or reading it failed.
  • No artefacts were found/reported.
Nov 17 22:12:25 UTC 2024 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job2206.test does not exist in job directory or reading it failed.

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bedroge commented Nov 16, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

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riscv-eessi-io-bot bot commented Nov 16, 2024

Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 16, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

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eessi-bot bot commented Nov 16, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

    • no jobs were submitted
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/29222

date job status comment
Nov 16 22:18:42 UTC 2024 submitted job id 29222 awaits release by job manager
Nov 16 22:19:12 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:24:31 UTC 2024 running job 29222 is running
Nov 16 23:31:38 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-29222.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1731798686.tar.gzsize: 42 MiB (44715449 bytes)
entries: 769
modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/aarch64/neoverse_n1/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/aarch64/neoverse_n1
no other files in tarball
Nov 16 23:31:38 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:aarch64-neoverse-n1-node+default
P: perf: 41.691 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:aarch64-neoverse-n1-node+default
P: perf: 39.384 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:aarch64-neoverse-n1-node+default
P: perf: 41.816 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:aarch64-neoverse-n1-node+default
P: perf: 666.656 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:aarch64-neoverse-n1-node+default
P: perf: 646.361 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-neoverse-n1-node+default
P: latency: 3.81 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-neoverse-n1-node+default
P: latency: 3.55 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-neoverse-n1-node+default
P: latency: 5.68 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-neoverse-n1-node+default
P: latency: 5.39 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-neoverse-n1-node+default
P: latency: 0.43 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-neoverse-n1-node+default
P: latency: 0.47 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-neoverse-n1-node+default
P: bandwidth: 20162.08 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-neoverse-n1-node+default
P: bandwidth: 19965.45 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-29222.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:37:21 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-aarch64-neoverse_n1-1731798686.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/29223

date job status comment
Nov 16 22:18:46 UTC 2024 submitted job id 29223 awaits release by job manager
Nov 16 22:19:13 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:24:32 UTC 2024 running job 29223 is running
Nov 16 23:20:52 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-29223.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1731798309.tar.gzsize: 44 MiB (47095041 bytes)
entries: 769
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/aarch64/neoverse_v1/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/aarch64/neoverse_v1
no other files in tarball
Nov 16 23:20:52 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 54.448 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 54.594 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 60.049 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 985.697 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 981.316 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 3.05 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 3.23 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 4.43 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 4.54 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 0.37 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 0.37 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-neoverse-v1-node+default
P: bandwidth: 28725.18 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-neoverse-v1-node+default
P: bandwidth: 28762.75 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-29223.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:37:39 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-aarch64-neoverse_v1-1731798309.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/29224

date job status comment
Nov 16 22:18:50 UTC 2024 submitted job id 29224 awaits release by job manager
Nov 16 22:19:19 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:26:44 UTC 2024 running job 29224 is running
Nov 16 23:29:32 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-29224.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-generic-1731798454.tar.gzsize: 45 MiB (47320002 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/generic/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/x86_64/generic/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/x86_64/generic
no other files in tarball
Nov 16 23:29:32 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-generic-node+default
P: perf: 33.01 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-generic-node+default
P: perf: 32.382 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-generic-node+default
P: perf: 31.51 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-generic-node+default
P: perf: 459.199 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-generic-node+default
P: perf: 472.112 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-generic-node+default
P: latency: 5.09 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-generic-node+default
P: latency: 6.27 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-generic-node+default
P: latency: 30.25 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-generic-node+default
P: latency: 55.07 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-generic-node+default
P: latency: 0.71 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-generic-node+default
P: latency: 0.77 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-generic-node+default
P: bandwidth: 10703.43 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-generic-node+default
P: bandwidth: 10749.35 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-29224.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:38:00 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-generic-1731798454.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/29225

date job status comment
Nov 16 22:18:54 UTC 2024 submitted job id 29225 awaits release by job manager
Nov 16 22:19:15 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:25:37 UTC 2024 running job 29225 is running
Nov 16 23:29:31 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-29225.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1731798783.tar.gzsize: 47 MiB (50132214 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/x86_64/amd/zen2/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/x86_64/amd/zen2
no other files in tarball
Nov 16 23:29:31 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 58.744 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 58.72 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 53.445 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 441.658 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 446.21 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 4.54 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 5.01 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 9.08 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 9.31 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 0.33 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 0.31 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen2-node+default
P: bandwidth: 7785.26 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen2-node+default
P: bandwidth: 7713.12 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-29225.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:38:18 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen2-1731798783.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/29226

date job status comment
Nov 16 22:18:59 UTC 2024 submitted job id 29226 awaits release by job manager
Nov 16 22:19:17 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:26:42 UTC 2024 running job 29226 is running
Nov 16 23:19:45 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-29226.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1731798345.tar.gzsize: 47 MiB (50148291 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/x86_64/amd/zen3/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/x86_64/amd/zen3
no other files in tarball
Nov 16 23:19:45 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 72.297 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 72.222 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 72.508 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 527.086 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 529.597 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 2.41 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 2.32 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 5.49 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 7.15 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 0.24 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 0.23 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen3-node+default
P: bandwidth: 14685.12 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen3-node+default
P: bandwidth: 14592.48 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-29226.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:38:37 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen3-1731798345.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/29227

date job status comment
Nov 16 22:19:03 UTC 2024 submitted job id 29227 awaits release by job manager
Nov 16 22:19:21 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:26:46 UTC 2024 running job 29227 is running
Nov 16 23:26:19 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-29227.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-haswell-1731798566.tar.gzsize: 47 MiB (50134469 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/x86_64/intel/haswell/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/x86_64/intel/haswell
no other files in tarball
Nov 16 23:26:20 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-intel-haswell-node+default
P: perf: 50.626 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-intel-haswell-node+default
P: perf: 50.652 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-intel-haswell-node+default
P: perf: 50.738 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-intel-haswell-node+default
P: perf: 442.844 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-intel-haswell-node+default
P: perf: 462.499 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-intel-haswell-node+default
P: latency: 5.51 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-intel-haswell-node+default
P: latency: 5.32 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-intel-haswell-node+default
P: latency: 9.2 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-intel-haswell-node+default
P: latency: 9.24 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-intel-haswell-node+default
P: latency: 0.8 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-intel-haswell-node+default
P: latency: 0.78 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-intel-haswell-node+default
P: bandwidth: 10470.5 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-intel-haswell-node+default
P: bandwidth: 10343.78 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-29227.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:38:55 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-haswell-1731798566.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Nov 16, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/29228

date job status comment
Nov 16 22:19:07 UTC 2024 submitted job id 29228 awaits release by job manager
Nov 16 22:19:23 UTC 2024 released job awaits launch by Slurm scheduler
Nov 16 22:27:54 UTC 2024 running job 29228 is running
Nov 16 23:23:04 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-29228.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1731798507.tar.gzsize: 47 MiB (49468260 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/x86_64/intel/skylake_avx512
no other files in tarball
Nov 16 23:23:04 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-intel-skylake-node+default
P: perf: 65.72 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-intel-skylake-node+default
P: perf: 65.763 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-intel-skylake-node+default
P: perf: 65.57 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-intel-skylake-node+default
P: perf: 462.77 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-intel-skylake-node+default
P: perf: 486.693 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-intel-skylake-node+default
P: latency: 3.58 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-intel-skylake-node+default
P: latency: 3.5 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-intel-skylake-node+default
P: latency: 7.98 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-intel-skylake-node+default
P: latency: 7.75 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-intel-skylake-node+default
P: latency: 0.45 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-intel-skylake-node+default
P: latency: 0.41 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-intel-skylake-node+default
P: bandwidth: 10826.89 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-intel-skylake-node+default
P: bandwidth: 10824.39 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-29228.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:39:13 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1731798507.tar.gz to S3 bucket succeeded

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bedroge commented Nov 18, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4

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Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
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Updates by the bot instance eessi-bot-mc-azure (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
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eessi-bot bot commented Nov 18, 2024

New job on instance eessi-bot-mc-azure for CPU micro-architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/2274

date job status comment
Nov 18 06:08:38 UTC 2024 submitted job id 2274 awaits release by job manager
Nov 18 06:09:11 UTC 2024 released job awaits launch by Slurm scheduler
Nov 18 06:15:14 UTC 2024 running job 2274 is running
Nov 19 06:15:55 UTC 2024 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job2274.result does not exist in job directory or reading it failed.
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Nov 19 06:15:55 UTC 2024 test result
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  • Job test file _bot_job2274.test does not exist in job directory or reading it failed.

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bedroge commented Nov 21, 2024

The zen4 cluster got reinstalled, so let's try this one more time:

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4

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    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from ocaisa

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
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eessi-bot bot commented Nov 25, 2024

New job on instance eessi-bot-mc-azure for CPU micro-architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/28

date job status comment
Nov 25 08:27:26 UTC 2024 submitted job id 28 awaits release by job manager
Nov 25 08:27:56 UTC 2024 released job awaits launch by Slurm scheduler
Nov 25 08:34:00 UTC 2024 running job 28 is running
Nov 25 12:27:33 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-28.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
No artefacts were created or found.
Nov 25 12:27:33 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 1809.163 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 668.434 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 3.45 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 3.5 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 10.85 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 10.12 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 0.3 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 0.3 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen4-node+default
P: bandwidth: 49208.46 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen4-node+default
P: bandwidth: 46575.89 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-28.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@bedroge
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bedroge commented Nov 25, 2024

I think it's stuck again, this is the last part of the process tree:

bot        32821  0.0  0.0   2592  1728 ?        S    08:37   0:00      |       |   |                                       \_ /bin/sh -c cd /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj/python_packaging/gmxapi/gmxapi_staging && /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/CMake/3.27.6-GCCcore-13.2.0/bin/cmake -E env --unset=OMP_NUM_THREADS /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/Python/3.11.5-GCCcore-13.2.0/bin/python -m pytest -rA -l --log-cli-level ERROR /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/gromacs-2024.4/python_packaging/gmxapi/test
bot        32822  0.0  0.0  27768 10368 ?        S    08:37   0:00      |       |   |                                           \_ /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/CMake/3.27.6-GCCcore-13.2.0/bin/cmake -E env --unset=OMP_NUM_THREADS /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/Python/3.11.5-GCCcore-13.2.0/bin/python -m pytest -rA -l --log-cli-level ERROR /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/gromacs-2024.4/python_packaging/gmxapi/test
bot        32824  0.0  0.0 238188 79844 ?        Sl   08:37   0:00      |       |   |                                               \_ /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/Python/3.11.5-GCCcore-13.2.0/bin/python -m pytest -rA -l --log-cli-level ERROR /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/gromacs-2024.4/python_packaging/gmxapi/test
bot        32834  0.0  0.0  90756 20244 ?        Ssl  08:37   0:00      |       |   |                                                   \_ orted --hnp --set-sid --report-uri 14 --singleton-died-pipe 15 -mca state_novm_select 1 -mca ess hnp -mca pmix ^s1,s2,cray,isolated

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bedroge commented Nov 25, 2024

Situation is still exactly the same, so it's really stuck. I had a look at the log files on the node, and easybuild_obj/Testing/Temporary/LastTest.log shows that the tests seem to have completed:

89/89 Testing: EnsembleBoundingPotentialPlugin.ForceCalc
89/89 Test: EnsembleBoundingPotentialPlugin.ForceCalc
Command: "/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj/bin/gmxapi_extension_bounding-test" "--gtest_filter=EnsembleBoundingPotentialPlugin.ForceCalc"
Directory: /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj/python_packaging/sample_restraint/tests
"EnsembleBoundingPotentialPlugin.ForceCalc" start time: Nov 25 08:39 UTC
Output:
----------------------------------------------------------
Running main() from /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/gromacs-2024.4/src/external/googletest/googletest/src/gtest_main.cc
Note: Google Test filter = EnsembleBoundingPotentialPlugin.ForceCalc
[==========] Running 1 test from 1 test suite.
[----------] Global test environment set-up.
[----------] 1 test from EnsembleBoundingPotentialPlugin
[ RUN      ] EnsembleBoundingPotentialPlugin.ForceCalc
[       OK ] EnsembleBoundingPotentialPlugin.ForceCalc (0 ms)
[----------] 1 test from EnsembleBoundingPotentialPlugin (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test suite ran. (0 ms total)
[  PASSED  ] 1 test.
<end of output>
Test time =   0.05 sec
----------------------------------------------------------
Test Passed.
"EnsembleBoundingPotentialPlugin.ForceCalc" end time: Nov 25 08:39 UTC
"EnsembleBoundingPotentialPlugin.ForceCalc" time elapsed: 00:00:00
----------------------------------------------------------

End testing: Nov 25 08:39 UTC

GTest =  82.01 sec*proc

IntegrationTest =  42.41 sec*proc

MpiTest =  51.55 sec*proc

QuickGpuTest =  11.36 sec*proc

SlowGpuTest =  61.33 sec*proc

SlowTest =  36.34 sec*proc

UnitTest =   3.26 sec*proc

So it's somehow getting stuck during the completion phase of the test suite.

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bedroge commented Nov 25, 2024

I've killed that orted process (with -9, otherwise it couldn't be killed), and now the Easybuild log shows:

100% tests passed, 0 tests failed out of 89

Label Time Summary:
GTest              =  82.01 sec*proc (85 tests)
IntegrationTest    =  42.41 sec*proc (28 tests)
MpiTest            =  51.55 sec*proc (21 tests)
QuickGpuTest       =  11.36 sec*proc (20 tests)
SlowGpuTest        =  61.33 sec*proc (14 tests)
SlowTest           =  36.34 sec*proc (13 tests)
UnitTest           =   3.26 sec*proc (44 tests)

Total Test time (real) =  47.23 sec
make[3]: Leaving directory '/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj'
[100%] Built target run-ctest-nophys
make  -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend
make[3]: Entering directory '/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj'
cd /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj && /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/CMake/3.27.6-GCCcore-13.2.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/gromacs-2024.4 /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/gromacs-2024.4/tests /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj/tests /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj'
make  -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build
make[3]: Entering directory '/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj'
[100%] Some tests not available
cd /tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj/tests && /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen4/software/CMake/3.27.6-GCCcore-13.2.0/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON."
NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON.
make[3]: Leaving directory '/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj'
[100%] Built target missing-tests-notice
make[3]: *** [python_packaging/gmxapi/test/CMakeFiles/gmxapi_pytest.dir/build.make:73: python_packaging/gmxapi/test/CMakeFiles/gmxapi_pytest] Error 195
make[3]: Leaving directory '/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj'
make[2]: *** [CMakeFiles/Makefile2:7260: python_packaging/gmxapi/test/CMakeFiles/gmxapi_pytest.dir/all] Error 2
make[2]: Leaving directory '/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj'
make[1]: *** [CMakeFiles/Makefile2:3472: CMakeFiles/check.dir/rule] Error 2
make[1]: Leaving directory '/tmp/bot/easybuild/build/GROMACS/2024.4/foss-2023b/easybuild_obj'
make: *** [Makefile:632: check] Error 2

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bedroge commented Nov 25, 2024

I tried this interactively and using manually submitted build jobs (using EESSI-extend), and saw the same kind of issues with MPI calls. Since it looks familiar to the EESSI that we've seen before on the haswell nodes of our AWS cluster (#531) and the generoso build cluster (easybuilders/easybuild-easyconfigs#18925), I tried with `export FI_PROVIDER="^psm3"; this seems to work, I got one successful build now. I'll try it again, and if it succeeds again, maybe we should add this to the bot config like we've done for the AWS bot.

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bedroge commented Nov 26, 2024

I've tried to add a SitePackage.lua that sets FI_PROVIDER="^psm3" for the zen4 bot, let's try again.

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4

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riscv-eessi-io-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

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riscv-eessi-io-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

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eessi-bot bot commented Nov 26, 2024

New job on instance eessi-bot-mc-azure for CPU micro-architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_815/41

date job status comment
Nov 26 11:04:06 UTC 2024 submitted job id 41 awaits release by job manager
Nov 26 11:04:29 UTC 2024 released job awaits launch by Slurm scheduler
Nov 26 11:07:33 UTC 2024 running job 41 is running
Nov 26 11:54:08 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-41.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen4-1732621199.tar.gzsize: 47 MiB (49540291 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/amd/zen4/modules/all
GROMACS/2024.4-foss-2023b.lua
software under 2023.06/software/linux/x86_64/amd/zen4/software
GROMACS/2024.4-foss-2023b
other under 2023.06/software/linux/x86_64/amd/zen4
no other files in tarball
Nov 26 11:54:08 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 171.64 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 171.967 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 166.711 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 1799.737 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 1771.161 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 3.6 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 3.27 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 10.23 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 10.26 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 0.29 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 0.29 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen4-node+default
P: bandwidth: 45470.64 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen4-node+default
P: bandwidth: 44044.58 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-41.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Nov 27 17:37:06 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen4-1732621199.tar.gz to S3 bucket succeeded

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ocaisa commented Nov 27, 2024

@bedroge Is this now ready to deploy?

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bedroge commented Nov 27, 2024

@bedroge Is this now ready to deploy?

Yes, I think so.

@bedroge bedroge added the ready-to-deploy Mark a PR as ready to deploy label Nov 27, 2024
@ocaisa ocaisa added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Nov 27, 2024
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Label bot:deploy has been set by user ocaisa, but this person does not have permission to trigger deployments

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Label bot:deploy has been set by user ocaisa, but this person does not have permission to trigger deployments

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Label bot:deploy has been set by user ocaisa, but this person does not have permission to trigger deployments

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Label bot:deploy has been set by user ocaisa, but this person does not have permission to trigger deployments

@ocaisa ocaisa merged commit 810cb54 into EESSI:2023.06-software.eessi.io Nov 27, 2024
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eessi-bot bot commented Nov 27, 2024

PR merged! Moved ['/project/def-users/SHARED/jobs/2024.11/pr_815/29221', '/project/def-users/SHARED/jobs/2024.11/pr_815/29222', '/project/def-users/SHARED/jobs/2024.11/pr_815/29223', '/project/def-users/SHARED/jobs/2024.11/pr_815/29224', '/project/def-users/SHARED/jobs/2024.11/pr_815/29225', '/project/def-users/SHARED/jobs/2024.11/pr_815/29226', '/project/def-users/SHARED/jobs/2024.11/pr_815/29227', '/project/def-users/SHARED/jobs/2024.11/pr_815/29228'] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2024.11.27

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PR merged! Moved ['/project/def-users/SHARED/jobs/2024.11/pr_815/21', '/project/def-users/SHARED/jobs/2024.11/pr_815/22', '/project/def-users/SHARED/jobs/2024.11/pr_815/28', '/project/def-users/SHARED/jobs/2024.11/pr_815/41'] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2024.11.27

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PR merged! Moved [] to /home/eessibot/shared/trash_bin/EESSI/software-layer/2024.11.27

@bedroge bedroge deleted the gromacs_2023.4 branch November 27, 2024 20:05
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