DOI and other tidy for release #808
Workflow file for this run
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| name: CI example notebooks | |
| on: | |
| push: | |
| branches: | |
| - "*" | |
| - "!v[0-9]+.[0-9]+.[0-9]+*" | |
| pull_request: | |
| branches: | |
| - "*" | |
| - "!v[0-9]+.[0-9]+.[0-9]+*" | |
| jobs: | |
| test: | |
| name: ${{ matrix.os}} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ "ubuntu-latest" ] | |
| python-version: [ "3.10"] | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2.4.0 | |
| - name: Setup gfortran | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: gcc | |
| version: 11 | |
| - name: Set environment variables | |
| run: | | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| echo "SETUPTOOLS_ENABLE_FEATURES=legacy-editable" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1.9.0 | |
| with: | |
| micromamba-version: '1.5.10-0' | |
| environment-file: environment_w_jupyter.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Checkout MODFLOW 6 | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6 | |
| ref: develop | |
| path: modflow6 | |
| - name: Update flopy MODFLOW 6 classes | |
| working-directory: modflow6/autotest | |
| run: | | |
| python update_flopy.py | |
| - name: Install mf6 nightly build binaries | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: modflow6-nightly-build | |
| - name: Install error reporter | |
| run: | | |
| pip install pytest-github-actions-annotate-failures | |
| - name: Install dependencies and this package | |
| run: | | |
| pip install -e . | |
| - name: Version info | |
| run: | | |
| echo ------- | |
| conda info -a | |
| echo ------- | |
| conda list | |
| echo ------- | |
| pip -V | |
| echo ------- | |
| pip list | |
| - name: Import pywatershed | |
| run: | | |
| python -c "import pywatershed" | |
| - name: Get GIS files for tests | |
| run: | | |
| python pywatershed/utils/gis_files.py | |
| - name: Get additional domain files for notebooks | |
| run: | | |
| python pywatershed/utils/addtl_domain_files.py | |
| - name: Run tests | |
| working-directory: autotest_exs | |
| run: | | |
| pytest -s -vv --durations=0 |