Merge pull request #2302 from EBISPOT/2178

Added sequencing terms for #2178
EBISPOT · Oct 15, 2024 · 04144e7 · 04144e7
2 parents ab939af + 8a437f1
commit 04144e7
Showing 1 changed file with 41 additions and 1 deletion.
diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl
@@ -17240,6 +17240,10 @@ Declaration(Class(efo:EFO_0022853))
 Declaration(Class(efo:EFO_0022854))
 Declaration(Class(efo:EFO_0022855))
 Declaration(Class(efo:EFO_0022856))
+Declaration(Class(efo:EFO_0022857))
+Declaration(Class(efo:EFO_0022858))
+Declaration(Class(efo:EFO_0022859))
+Declaration(Class(efo:EFO_0022860))
 Declaration(Class(efo:EFO_0030000))
 Declaration(Class(efo:EFO_0030001))
 Declaration(Class(efo:EFO_0030002))
@@ -29808,7 +29812,7 @@ AnnotationAssertion(rdfs:label obo:RO_0001025 "located_in")
 
 AnnotationAssertion(rdfs:label obo:RO_0002104 "has_plasma_membrane_part")
 
-# Object Property: obo:RO_0002160 (only_in_taxon)
+# Object Property: obo:RO_0002160 (only in taxon)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20973947") obo:IAO_0000115 obo:RO_0002160 "S only_in_taxon T iff: S SubClassOf in_taxon only T")
 AnnotationAssertion(oboInOwl:hasDbXref obo:RO_0002160 "RO:0002160")
@@ -207707,6 +207711,42 @@ AnnotationAssertion(dc:date efo:EFO_0022856 "2024-10-14T15:55:29Z"^^xsd:dateTime
 AnnotationAssertion(rdfs:label efo:EFO_0022856 "feeding problems of newborn"@en)
 SubClassOf(efo:EFO_0022856 efo:EFO_0010238)
 
+# Class: efo:EFO_0022857 (Visium Spatial Gene Expression V1)
+
+AnnotationAssertion(Annotation(efo:definition_citation "https://orcid.org/0000-0003-4389-9821") obo:IAO_0000115 efo:EFO_0022857 "A 10x Genomics transcriptomics method that uses a spatially barcoded slide to capture and detect mRNA in intact tissue sections, where sample placement on the slide is a manual process. There is a total of 4992 spots in each capture area measuring 6.5mm x 6.5mm.")
+AnnotationAssertion(dc:creator efo:EFO_0022857 "Zoe May Pendlington")
+AnnotationAssertion(dc:date efo:EFO_0022857 "2024-10-15T08:16:35Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022857 "Visium V1")
+AnnotationAssertion(rdfs:label efo:EFO_0022857 "Visium Spatial Gene Expression V1"@en)
+SubClassOf(efo:EFO_0022857 efo:EFO_0010961)
+
+# Class: efo:EFO_0022858 (Visium CytAssist Spatial Gene Expression V2)
+
+AnnotationAssertion(Annotation(efo:definition_citation "https://orcid.org/0000-0003-4389-9821") obo:IAO_0000115 efo:EFO_0022858 "A 10x Genomics transcriptomics method that uses a spatially barcoded slide to capture and detect mRNA in intact tissue sections, using the Visium CytAssist instrument to facilitate the transfer of tissue samples from standard plain glass slides to Visium slides.")
+AnnotationAssertion(dc:creator efo:EFO_0022858 "Zoe May Pendlington")
+AnnotationAssertion(dc:date efo:EFO_0022858 "2024-10-15T08:17:51Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022858 "Visium CytAssist")
+AnnotationAssertion(rdfs:label efo:EFO_0022858 "Visium CytAssist Spatial Gene Expression V2"@en)
+SubClassOf(efo:EFO_0022858 efo:EFO_0010961)
+
+# Class: efo:EFO_0022859 (Visium CytAssist Spatial Gene Expression, 6.5mm)
+
+AnnotationAssertion(Annotation(efo:definition_citation "https://orcid.org/0000-0003-4389-9821") obo:IAO_0000115 efo:EFO_0022859 "A 10x Genomics transcriptomics method that uses a spatially barcoded slide to capture and detect mRNA in intact tissue sections, using the Visium CytAssist instrument to facilitate the transfer of tissue samples from standard plain glass slides to Visium slides. There is a total of 4992 spots in each capture area measuring 6.5mm x 6.5mm.")
+AnnotationAssertion(dc:creator efo:EFO_0022859 "Zoe May Pendlington")
+AnnotationAssertion(dc:date efo:EFO_0022859 "2024-10-15T08:18:49Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022859 "Visium CytAssist, 6.5mm")
+AnnotationAssertion(rdfs:label efo:EFO_0022859 "Visium CytAssist Spatial Gene Expression, 6.5mm"@en)
+SubClassOf(efo:EFO_0022859 efo:EFO_0022858)
+
+# Class: efo:EFO_0022860 (Visium CytAssist Spatial Gene Expression, 11mm)
+
+AnnotationAssertion(Annotation(efo:definition_citation "https://orcid.org/0000-0003-4389-9821") obo:IAO_0000115 efo:EFO_0022860 "A 10x Genomics transcriptomics method that uses a spatially barcoded slide to capture and detect mRNA in intact tissue sections, using the Visium CytAssist instrument to facilitate the transfer of tissue samples from standard plain glass slides to Visium slides. There is a total of 14336 spots in each capture area measuring 11mm x 11mm.")
+AnnotationAssertion(dc:creator efo:EFO_0022860 "Zoe May Pendlington")
+AnnotationAssertion(dc:date efo:EFO_0022860 "2024-10-15T08:19:48Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0022860 "Visium CytAssist, 11mm")
+AnnotationAssertion(rdfs:label efo:EFO_0022860 "Visium CytAssist Spatial Gene Expression, 11mm"@en)
+SubClassOf(efo:EFO_0022860 efo:EFO_0022858)
+
 # Class: efo:EFO_0030000 (STARmap)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29930089") Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0002-3090-9894") obo:IAO_0000115 efo:EFO_0030000 "STARmap is an image-based technology for 3D intact-tissue RNA sequencing, which integrates hydrogel-tissue chemistry, targeted signal amplification, and in situ sequencing.")