Hamo fixes oct 2023 #253

On branch bojan_more_robust_communicator modified: Documentation/fortran.vim modified: Sources/Convert/Convert_Mod.f90 modified: Sources/Generate/Range_Mod.f90 modified: Sources/Generate/Smooths_Mod.f90 modified: Sources/Process/Front_Mod.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Front.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Surf.f90 modified: Sources/Process/Surf_Mod.f90 modified: Sources/Process/Surf_Mod/Check_Side.f90 modified: Sources/Process/Vof_Mod/Utilities/Mass_Transfer_Estimate.f90

On branch bojan_more_robust_communicator modified: Documentation/fortran.vim

On branch bojan_more_robust_communicator new file: divide.1.scr new file: divide.2.scr new file: lower_dom.msh.gz new file: upper_dom.msh.gz

On branch bojan_more_robust_communicator deleted: Dimensional_Solvers/Bicg.f90 deleted: Dimensional_Solvers/Cg.f90 deleted: Dimensional_Solvers/Cgs.f90 deleted: Normalized_Solvers/Bicg.f90 deleted: Normalized_Solvers/Cg.f90 deleted: Normalized_Solvers/Cgs.f90

This should have only a small update in fortran.vim

On branch bojan_more_robust_communicator modified: Documentation/fortran.vim

On branch bojan_more_robust_communicator modified: Process/Petsc_Mod/True/Create_Petsc.f90

On branch bojan_more_robust_communicator modified: Documentation/all_control_keywords

On branch bojan_more_robust_communicator new file: Tests/Swarm/Three_Phase_Flow/sphere.stl new file: Tests/Vof/Rising_Bubble/sphere.stl

They include: line alignment, removing the features which do not exist in the code any more, fixing the syntax of features which do exist. On branch bojan_more_robust_communicator modified: Tests/Laminar/Convective_Outflow/control modified: Tests/Laminar/Flat_Plate/control modified: Tests/Laminar/Module/control modified: Tests/Les/Barc/control modified: Tests/Les/Forrest/control modified: Tests/Les/Pipe_Re_Tau_180/control modified: Tests/Les/Rayleigh_Benard_Convection_Ra_10e09/control modified: Tests/Manual/Rising_Bubble/control modified: Tests/Rans/Channel_Re_Tau_590/Long_Domain/control modified: Tests/Rans/Rayleigh_Benard_Convection_Ra_10e09/control modified: Tests/Swarm/Three_Phase_Flow/control modified: Tests/Vof/Fuel_Bundle/control modified: Tests/Vof/Rising_Bubble/control modified: Tests/Vof/Stefan/control modified: Tests/Vof/Sucking/control

No idea what I am merging, but I hope it's something good.

On branch bojan_more_robust_communicator modified: test_build.sh

On branch bojan_more_robust_communicator modified: all_control_keywords

On branch bojan_more_robust_communicator modified: Functionality/Eddies/control modified: Functionality/Gradients/control modified: Functionality/Omp/control modified: Hybrid_Les_Rans/Channel_Re_Tau_2000/Stretched_Mesh/control modified: Hybrid_Les_Rans/Channel_Re_Tau_2000/Uniform_Mesh/control modified: Hybrid_Les_Rans/Cylinder/control-ra-1e09 modified: Hybrid_Les_Rans/Cylinder/control-ra-1e10 modified: Hybrid_Les_Rans/Cylinder/control-ra-1e11 modified: Hybrid_Les_Rans/Cylinder/control-ra-1e12 modified: Laminar/Accuracy_Test/Channel_Re_2000/control modified: Laminar/Backstep/Nonorthogonal/control modified: Laminar/Backstep/Orthogonal/Solvers_Scaling/control modified: Laminar/Backstep/Orthogonal/control modified: Laminar/Backstep/Orthogonal_With_Eddies/control modified: Laminar/Backstep/Polyhedral/control modified: Laminar/Cavity/Hydrostatic/control modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_0100/control modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_0100/control_piso modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_0100/control_simple modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_0400/control modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_0400/control_piso modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_0400/control_simple modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_1000/control modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_1000/control_piso modified: Laminar/Cavity/Lid_Driven/Hexahedral/Re_1000/control_simple modified: Laminar/Cavity/Lid_Driven/Skewed/control modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_0.1/Ra_10e3/control.1 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_0.1/Ra_10e3/control.2 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_0.1/Ra_10e3/control.3 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_0.1/Ra_10e5/control.1 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_0.1/Ra_10e5/control.2 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_0.1/Ra_10e5/control.3 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_1.0/Ra_10e3/control.1 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_1.0/Ra_10e3/control.2 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_1.0/Ra_10e3/control.3 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_1.0/Ra_10e5/control.1 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_1.0/Ra_10e5/control.2 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_1.0/Ra_10e5/control.3 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_10.0/Ra_10e3/control.1 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_10.0/Ra_10e3/control.2 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_10.0/Ra_10e3/control.3 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_10.0/Ra_10e5/control.1 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_10.0/Ra_10e5/control.2 modified: Laminar/Cavity/Thermally_Driven/Conjugate/K_10.0/Ra_10e5/control.3 modified: Laminar/Cavity/Thermally_Driven/Conjugate/control.0 modified: Laminar/Cavity/Thermally_Driven/Direct/Ra_10e3/control modified: Laminar/Cavity/Thermally_Driven/Direct/Ra_10e4/control modified: Laminar/Cavity/Thermally_Driven/Direct/Ra_10e5/control modified: Laminar/Cavity/Thermally_Driven/Direct/Ra_10e6/control modified: Laminar/Cavity/Thermally_Driven/Direct/Ra_10e7/control modified: Laminar/Cavity/Thermally_Driven/Direct/Ra_10e8/control modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/control modified: Laminar/Cavity/Thermally_Driven/Skewed/control modified: Laminar/Channel/control modified: Laminar/Convective_Outflow/control modified: Laminar/Copy_Inlet/control.0 modified: Laminar/Copy_Inlet/control.1 modified: Laminar/Copy_Inlet/control.2 modified: Laminar/Cylinder/Horizontal/Re_100_A/control-m1-p2-s1 modified: Laminar/Cylinder/Horizontal/Re_100_A/control-m2-p3-s2 modified: Laminar/Cylinder/Horizontal/Re_100_A/control-m3-p4-s3 modified: Laminar/Cylinder/Horizontal/Re_100_A/control-m4-p5-s4 modified: Laminar/Cylinder/Horizontal/Re_100_A/control-m5-p6-s5 modified: Laminar/Cylinder/Horizontal/Re_100_A/control-m6-p7-s6 modified: Laminar/Cylinder/Horizontal/Re_100_B/control-m1-p2-s1-g2 modified: Laminar/Cylinder/Horizontal/Re_100_B/control-m2-p3-s2-g3 modified: Laminar/Cylinder/Horizontal/Re_100_B/control-m3-p4-s3-g4 modified: Laminar/Cylinder/Horizontal/Re_100_B/control-m4-p5-s4-g5 modified: Laminar/Cylinder/Horizontal/Re_100_B/control-m5-p6-s5-g6 modified: Laminar/Cylinder/Horizontal/Re_100_B/control-m6-p7-s6-g7 modified: Laminar/Cylinder/Horizontal/Re_100_C/control-m1-p2-s1-g2 modified: Laminar/Cylinder/Horizontal/Re_100_C/control-m2-p3-s2-g3 modified: Laminar/Cylinder/Horizontal/Re_100_C/control-m3-p4-s3-g4 modified: Laminar/Cylinder/Horizontal/Re_100_C/control-m4-p5-s4-g5 modified: Laminar/Cylinder/Horizontal/Re_100_C/control-m5-p6-s5-g6 modified: Laminar/Cylinder/Horizontal/Re_100_C/control-m6-p7-s6-g7 modified: Laminar/Cylinder/Horizontal/Re_100_D/control-m1-p2-s1-g2 modified: Laminar/Cylinder/Horizontal/Re_100_D/control-m2-p3-s2-g3 modified: Laminar/Cylinder/Horizontal/Re_100_D/control-m3-p4-s3-g4 modified: Laminar/Cylinder/Horizontal/Re_100_D/control-m4-p5-s4-g5 modified: Laminar/Cylinder/Horizontal/Re_100_D/control-m5-p6-s5-g6 modified: Laminar/Cylinder/Horizontal/Re_100_D/control-m6-p7-s6-g7 modified: Laminar/Cylinder/Vertical/control-ra-1e05 modified: Laminar/Cylinder/Vertical/control-ra-1e06 modified: Laminar/Cylinder/Vertical/control-ra-1e07 modified: Laminar/Cylinder/Vertical/control-ra-1e08 modified: Laminar/Cylinder/Vertical/control-ra-1e5 modified: Laminar/Cylinder/Vertical/control-ra-1e6 modified: Laminar/Cylinder/Vertical/control-ra-1e7 modified: Laminar/Flat_Plate/control modified: Laminar/Heat_Exchanger/2_Domains/control.0 modified: Laminar/Heat_Exchanger/2_Domains/control.1 modified: Laminar/Heat_Exchanger/2_Domains/control.2 modified: Laminar/Heat_Exchanger/3_Domains/control.0 modified: Laminar/Heat_Exchanger/3_Domains/control.1 modified: Laminar/Heat_Exchanger/3_Domains/control.2 modified: Laminar/Heat_Exchanger/3_Domains/control.3 modified: Laminar/Membrane/2_Domains/control.0 modified: Laminar/Membrane/2_Domains/control.1 modified: Laminar/Membrane/2_Domains/control.2 modified: Laminar/Membrane/Spacers/Concave/control modified: Laminar/Membrane/Spacers/Parallelogram/control modified: Laminar/Membrane/Spacers/Teardrop/control modified: Laminar/Membrane/Spiral/control.0 modified: Laminar/Membrane/Spiral/control.1 modified: Laminar/Membrane/Spiral/control.2 modified: Laminar/Membrane/Spiral_Poly/control.0 modified: Laminar/Membrane/Spiral_Poly/control.1 modified: Laminar/Membrane/Spiral_Poly/control.2 modified: Laminar/Module/control modified: Les/Barc/control modified: Les/Channel_Re_Tau_180/Long_Domain/control modified: Les/Channel_Re_Tau_180/Periodic_Domain/control modified: Les/Forrest/control modified: Les/Matrix_Of_Cubes/control modified: Les/Pipe_Re_Tau_180/control modified: Les/Rayleigh_Benard_Convection_Ra_10e09/control modified: Manual/Channel_Re_Tau_590/Stretched_Mesh/control modified: Manual/Conjugate/control modified: Manual/Conjugate/control.1 modified: Manual/Conjugate/control.2 modified: Manual/Conjugate/control.3 modified: Manual/Impinging_Jet_2d_Distant_Re_23000/control modified: Manual/Inflows/Option_1/control modified: Manual/Inflows/Option_2/control modified: Manual/Inflows/Option_3/control modified: Manual/Inflows/Option_4/control modified: Manual/Inflows/Option_4/control.1 modified: Manual/Inflows/Option_4/control.2 modified: Manual/Matrix_Of_Cubes/control modified: Manual/Parallel/control modified: Manual/Rising_Bubble/control modified: Manual/Thermally_Driven/Varible/control modified: Rans/Backstep_Re_05100/control modified: Rans/Backstep_Re_28000/control modified: Rans/Channel_Re_Tau_590/Long_Domain/control modified: Rans/Channel_Re_Tau_590/Rsm/control_air modified: Rans/Channel_Re_Tau_590/Rsm/control_water modified: Rans/Channel_Re_Tau_590/Stretched_Mesh/control modified: Rans/Fuel_Bundle/control modified: Rans/Impinging_Jet_2d_Distant_Re_23000/control modified: Rans/Membrane/control.0 modified: Rans/Membrane/control.1 modified: Rans/Membrane/control.2 modified: Rans/Membrane/control.3 modified: Rans/Negative_Buoyant_Fountain/control-1 modified: Rans/Negative_Buoyant_Fountain/control-2 modified: Rans/Negative_Buoyant_Fountain/control-3 modified: Rans/Negative_Buoyant_Fountain/control-4 modified: Rans/Pipe_Re_Tau_550/control modified: Rans/Rayleigh_Benard_Convection_Ra_10e09/control modified: Rans/Single_Rod/control.0 modified: Rans/Single_Rod/control.1 modified: Rans/Single_Rod/control.2 modified: Rans/Single_Rod/control.3 modified: Swarm/Bend_90_Degrees/Control_Flow_Development/control modified: Swarm/Bend_90_Degrees/Control_Flow_Development/control.1 modified: Swarm/Bend_90_Degrees/Control_Flow_Development/control.2 modified: Swarm/Bend_90_Degrees/Control_Particle_Tracking/control modified: Swarm/Bend_90_Degrees/Control_Particle_Tracking/control.1 modified: Swarm/Bend_90_Degrees/Control_Particle_Tracking/control.2 modified: Swarm/Channel_Re_Tau_150/control_a_flow_development modified: Swarm/Channel_Re_Tau_150/control_b_particles modified: Swarm/Channel_Re_Tau_590/control_a_flow_development modified: Swarm/Channel_Re_Tau_590/control_b_particles modified: Swarm/Cylinders_Periodic/control modified: Swarm/Rod_Bundle_Hexagonal/control modified: Swarm/Rod_Bundle_Polyhedral/control modified: Swarm/T_Junction_Circular/control modified: Swarm/T_Junction_Square/control-1 modified: Swarm/T_Junction_Square/control-2 modified: Swarm/Three_Phase_Flow/control modified: Vof/Dam_Break_2d/control modified: Vof/Dam_Break_3d/control modified: Vof/Fuel_Bundle/control modified: Vof/Mencinger_And_Zun/control modified: Vof/Rising_Bubble/control modified: Vof/Stefan/control modified: Vof/Sucking/control

... which was preventing perfornance of backup tests On branch bojan_more_robust_communicator modified: test_build.sh

That's actually pretty useful since T-Flows ignores lines which it doesn't recognize, thus leaving potentially many errors un-recognized. On branch bojan_more_robust_communicator new file: Documentation/Syntax/.vim/ftdetect/control.vim new file: Documentation/Syntax/.vim/syntax/control.vim renamed: Documentation/fortran.vim -> Documentation/Syntax/.vim/syntax/fortran.vim new file: Documentation/Syntax/readme

It seems that previously_running should be an array (for nested calls), not just a single integer number. On branch bojan_more_robust_communicator modified: Shared/Profiler_Mod.f90 modified: Shared/Profiler_Mod/Start.f90 modified: Shared/Profiler_Mod/Stop.f90

On branch bojan_more_robust_communicator modified: Tests/Laminar/Backstep/Nonorthogonal/control modified: Tests/Laminar/Backstep/Orthogonal/control modified: Tests/Laminar/Backstep/Orthogonal_With_Eddies/control modified: Tests/Laminar/Backstep/Polyhedral/control

On branch bojan_more_robust_communicator modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Shared/Profiler_Mod.f90 modified: Sources/Shared/Profiler_Mod/Start.f90 modified: Sources/Shared/Profiler_Mod/Statistics.f90 modified: Sources/Shared/Profiler_Mod/Stop.f90 modified: Sources/Shared/Profiler_Mod/Update_By_Rank.f90

On branch bojan_more_robust_communicator modified: Sources/Process/Turb_Mod/Src_F22_Rsm_Manceau_Hanjalic.f90 modified: Sources/Process/Turb_Mod/Src_Rsm_Hanjalic_Jakirlic.f90 modified: Sources/Process/Turb_Mod/Src_Rsm_Manceau_Hanjalic.f90 modified: Sources/Process/Turb_Mod/Vis_T_Rsm.f90

renamed: User_Mod/Save_Vtu_Results.f90 -> User_Mod/Save_Results.f90 renamed: User_Mod/Save_Vtu_Swarm.f90 -> User_Mod/Save_Swarm.f90 modified: Results_Mod/Main_Results.f90 modified: User_Mod.f90

On branch bojan_more_robust_communicator modified: User_Mod/Save_Results.f90 modified: control

On branch bojan_more_robust_communicator modified: Process/Vof_Mod/Core/Initialize_From_Stl.f90

On branch bojan_more_robust_communicator modified: Process/Front_Mod/Save_Debug_Front_Vtu.f90

On branch bojan_more_robust_communicator modified: Process/Front_Mod/Save_Debug_Front_Vtu.f90 modified: Process/Results_Mod/Save_Vtu_Front.f90 modified: Process/Results_Mod/Save_Vtu_Surf.f90 modified: Process/Results_Mod/Save_Vtu_Swarm.f90

On branch bojan_more_robust_communicator modified: Process/Field_Mod.f90 new file: Process/Field_Mod/Utilities/Volume_Average.f90

On branch bojan_more_robust_communicator modified: Process/Read_Controls_Mod/Physical_Models.f90

Got rid of one ghost number along the way. On branch bojan_more_robust_communicator modified: Info_Mod.f90 modified: Info_Mod/Bulk_Fill.f90 modified: Info_Mod/Bulk_Print.f90 modified: Info_Mod/Bulk_Start.f90 modified: Info_Mod/Iter_Fill.f90 modified: Info_Mod/Iter_Fill_At.f90 new file: Info_Mod/Iter_Fill_Scalar_At.f90 deleted: Info_Mod/Iter_Fill_User_At.f90 modified: Info_Mod/Iter_Print.f90 modified: Info_Mod/Iter_Start.f90 modified: Info_Mod/Start.f90 modified: Info_Mod/Time_Fill.f90 modified: Info_Mod/Time_Print.f90 modified: Info_Mod/Time_Start.f90 modified: Info_Mod/Time_To_Exit.f90 modified: Main_Pro.f90 modified: Process_Mod/Compute_Energy.f90 modified: Process_Mod/Compute_Momentum.f90 modified: Process_Mod/Compute_Pressure.f90 modified: Process_Mod/Compute_Scalar.f90 modified: Process_Mod/Correct_Velocity.f90 modified: Process_Mod/Piso_Algorithm.f90 modified: Turb_Mod/Compute_F22.f90 modified: Turb_Mod/Compute_Stress.f90 modified: Turb_Mod/Compute_Variable.f90 modified: Vof_Mod/Core/Solve_System.f90

On branch bojan_more_robust_communicator modified: Info_Mod.f90 modified: Info_Mod/Bulk_Fill.f90 modified: Info_Mod/Bulk_Print.f90 modified: Info_Mod/Bulk_Start.f90 modified: Info_Mod/Iter_Fill.f90 modified: Info_Mod/Iter_Fill_At.f90 modified: Info_Mod/Iter_Fill_Scalar_At.f90 modified: Info_Mod/Iter_Print.f90 modified: Info_Mod/Iter_Start.f90 renamed: Info_Mod/Start.f90 -> Info_Mod/Start_Info.f90 modified: Info_Mod/Time_Fill.f90 modified: Info_Mod/Time_Print.f90 modified: Info_Mod/Time_Start.f90 modified: Info_Mod/Time_To_Exit.f90 modified: Main_Pro.f90 modified: Process_Mod/Compute_Energy.f90 modified: Process_Mod/Compute_Momentum.f90 modified: Process_Mod/Compute_Pressure.f90 modified: Process_Mod/Compute_Scalar.f90 modified: Process_Mod/Correct_Velocity.f90 modified: Process_Mod/Piso_Algorithm.f90 modified: Results_Mod/Main_Results.f90 modified: Turb_Mod/Compute_F22.f90 modified: Turb_Mod/Compute_Stress.f90 modified: Turb_Mod/Compute_Variable.f90 modified: Vof_Mod/Core/Solve_System.f90

On branch bojan_more_robust_communicator modified: Documentation/Syntax/.vim/syntax/fortran.vim

On branch bojan_more_robust_communicator modified: Info_Mod.f90 modified: Info_Mod/Bulk_Fill.f90 modified: Info_Mod/Bulk_Print.f90 modified: Info_Mod/Bulk_Start.f90 modified: Info_Mod/Iter_Fill.f90 modified: Info_Mod/Iter_Fill_At.f90 modified: Info_Mod/Iter_Fill_Scalar_At.f90 modified: Info_Mod/Iter_Print.f90 modified: Info_Mod/Iter_Start.f90 modified: Info_Mod/Start_Info.f90 modified: Info_Mod/Time_Fill.f90 modified: Info_Mod/Time_Print.f90 modified: Info_Mod/Time_Start.f90

On branch bojan_more_robust_communicator modified: Turb_Mod/Calculate_Deltas.f90 modified: Turb_Mod/Calculate_Heat_Flux.f90 modified: Turb_Mod/Calculate_Scalar_Flux.f90 modified: Turb_Mod/Calculate_Stress.f90 modified: Turb_Mod/Compute_F22.f90 modified: Turb_Mod/Compute_Stress.f90 modified: Turb_Mod/Compute_Variable.f90 modified: Turb_Mod/Ebf_Momentum.f90 modified: Turb_Mod/Ebf_Scalar.f90 modified: Turb_Mod/Src_Rsm_Hanjalic_Jakirlic.f90 modified: Turb_Mod/Src_Rsm_Manceau_Hanjalic.f90 modified: Turb_Mod/Src_T2.f90 modified: Turb_Mod/Src_Vis_Spalart_Almaras.f90 modified: Turb_Mod/Time_And_Length_Scale.f90 modified: Turb_Mod/Vis_T_Dynamic.f90 modified: Turb_Mod/Vis_T_Hybrid_Les_Prandtl.f90 modified: Turb_Mod/Vis_T_Hybrid_Les_Rans.f90 modified: Turb_Mod/Vis_T_Spalart_Allmaras.f90 modified: Turb_Mod/Vis_T_Subgrid.f90 modified: Turb_Mod/Vis_T_Tensorial.f90 modified: Turb_Mod/Vis_T_Wale.f90

... by declaring some functions which are often used as pure. Also introduced the Beta_Scalar function in Turb_Mod to avoid code duplication. Surprisingly, its introduction made the code slightly faster On branch bojan_more_robust_communicator modified: Field_Mod/Utilities/Prandtl_Numb.f90 modified: Field_Mod/Utilities/Schmidt_Numb.f90 modified: Turb_Mod.f90 new file: Turb_Mod/Beta_Scalar.f90 modified: Turb_Mod/Vis_T_K_Eps.f90 modified: Turb_Mod/Vis_T_K_Eps_Zeta_F.f90 modified: Turb_Mod/Vis_T_Subgrid.f90

On branch bojan_more_robust_communicator modified: Grid_Mod/Load_Cfn.f90 modified: Grid_Mod/Load_Dim.f90

On branch bojan_more_robust_communicator modified: Sources/Shared/Const_Mod.f90 modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Shared/Grid_Mod/Load_Cfn.f90 modified: Sources/Shared/Grid_Mod/Load_Dim.f90 modified: Sources/Shared/Grid_Mod/Save_Cfn.f90 modified: Sources/Shared/Grid_Mod/Save_Dim.f90

On branch bojan_more_robust_communicator modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Convert/makefile modified: Sources/Divide/makefile modified: Sources/Generate/makefile modified: Sources/Process/Interface_Mod/Create.f90 modified: Sources/Process/Main_Pro.f90 modified: Sources/Process/Monitor_Mod/Initialize.f90 modified: Sources/Process/Porosity_Mod/Create_Porosity.f90 modified: Sources/Process/Process_Mod/Initialize_Variables.f90 modified: Sources/Process/Read_Controls_Mod/Boundary_Conditions.f90 modified: Sources/Process/Read_Controls_Mod/Physical_Models.f90 modified: Sources/Process/Results_Mod/Main_Results.f90 modified: Sources/Shared/Comm_Mod/Sequential/Sendrecv_Int_Arrays.f90 modified: Sources/Shared/Comm_Mod/Sequential/Sendrecv_Log_Arrays.f90 modified: Sources/Shared/Comm_Mod/Sequential/Sendrecv_Real_Arrays.f90 modified: Sources/Shared/Control_Mod.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Open_Domain_File.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Open_Root_File.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Position_At_One_Key.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Position_At_Three_Keys.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Position_At_Two_Keys.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Read_Char_Item.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Read_Char_Item_On.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Read_Int_Item.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Read_Int_Item_On.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Read_Real_Item.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Read_Real_Item_On.f90 renamed: Sources/Shared/Control_Mod/Basic_Functions/Read_Real_Array.f90 -> Sources/Shared/Control_Mod/Basic_Functions/Read_Real_Vector.f90 renamed: Sources/Shared/Control_Mod/Basic_Functions/Read_Real_Array_On.f90 -> Sources/Shared/Control_Mod/Basic_Functions/Read_Real_Vector_On.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Read_Strings_On.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Similar_Warning.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Switch_To_Domain.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Switch_To_Root.f90 modified: Sources/Shared/Control_Mod/Input_Output/Backup_Save_Interval.f90 modified: Sources/Shared/Control_Mod/Input_Output/Load_Backup_Name.f90 modified: Sources/Shared/Control_Mod/Input_Output/Load_Initial_Solution_Name.f90 modified: Sources/Shared/Control_Mod/Input_Output/Problem_Name.f90 modified: Sources/Shared/Control_Mod/Input_Output/Profiler_Info.f90 modified: Sources/Shared/Control_Mod/Input_Output/Results_Save_Interval.f90 modified: Sources/Shared/Control_Mod/Input_Output/Save_Backup_Name.f90 modified: Sources/Shared/Control_Mod/Input_Output/Save_Initial_Condition.f90 modified: Sources/Shared/Control_Mod/Input_Output/Save_Initial_Solution_Name.f90 modified: Sources/Shared/Control_Mod/Input_Output/Save_Results_At_Boundaries.f90 modified: Sources/Shared/Control_Mod/Input_Output/Swarm_Save_Interval.f90 modified: Sources/Shared/Control_Mod/Input_Output/Wall_Time_Max_Hours.f90 modified: Sources/Shared/Control_Mod/Linear_Solvers.f90 modified: Sources/Shared/Control_Mod/Max_Threads.f90 modified: Sources/Shared/Control_Mod/Native/Max_Iterations_For_Energy_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Max_Iterations_For_Momentum_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Max_Iterations_For_Potential_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Max_Iterations_For_Presssure_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Max_Iterations_For_Scalars_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Max_Iterations_For_Turbulence_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Max_Iterations_For_Vof_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Max_Iterations_For_Wall_Distance_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Normalization_For_Energy_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Normalization_For_Momentum_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Normalization_For_Pressure_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Normalization_For_Scalars_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Normalization_For_Turbulence_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Preconditioner_For_System_Matrix.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Energy.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Momentum.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Potential.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Pressure.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Scalars.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Turbulence.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Vof.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Wall_Distance.f90 modified: Sources/Shared/Control_Mod/Native/Tolerance_For_Energy_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Tolerance_For_Momentum_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Tolerance_For_Potential_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Tolerance_For_Pressure_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Tolerance_For_Scalars_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Tolerance_For_Turbulence_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Tolerance_For_Vof_Solver.f90 modified: Sources/Shared/Control_Mod/Native/Tolerance_For_Wall_Distance_Solver.f90 modified: Sources/Shared/Control_Mod/Numerics/Advection_Scheme_For_Energy.f90 modified: Sources/Shared/Control_Mod/Numerics/Advection_Scheme_For_Momentum.f90 modified: Sources/Shared/Control_Mod/Numerics/Advection_Scheme_For_Scalars.f90 modified: Sources/Shared/Control_Mod/Numerics/Advection_Scheme_For_Turbulence.f90 modified: Sources/Shared/Control_Mod/Numerics/Advection_Scheme_For_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Blending_Coefficient_For_Energy.f90 modified: Sources/Shared/Control_Mod/Numerics/Blending_Coefficient_For_Momentum.f90 modified: Sources/Shared/Control_Mod/Numerics/Blending_Coefficient_For_Scalars.f90 modified: Sources/Shared/Control_Mod/Numerics/Blending_Coefficient_For_Turbulence.f90 modified: Sources/Shared/Control_Mod/Numerics/Blending_Coefficient_For_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Choi_Correction.f90 modified: Sources/Shared/Control_Mod/Numerics/Gradient_Method_For_Energy.f90 modified: Sources/Shared/Control_Mod/Numerics/Gradient_Method_For_Momentum.f90 modified: Sources/Shared/Control_Mod/Numerics/Gradient_Method_For_Pressure.f90 modified: Sources/Shared/Control_Mod/Numerics/Gradient_Method_For_Scalars.f90 modified: Sources/Shared/Control_Mod/Numerics/Gradient_Method_For_Turbulence.f90 modified: Sources/Shared/Control_Mod/Numerics/Gradient_Method_For_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Gradient_Method_For_Wall_Distance.f90 modified: Sources/Shared/Control_Mod/Numerics/Gu_Correction.f90 modified: Sources/Shared/Control_Mod/Numerics/Max_Correction_Cycles_Beta_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Max_Courant_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Max_Gauss_Gradients_Iterations.f90 modified: Sources/Shared/Control_Mod/Numerics/Max_Least_Squares_Gradients_Iterations.f90 modified: Sources/Shared/Control_Mod/Numerics/Max_Simple_Iterations.f90 modified: Sources/Shared/Control_Mod/Numerics/Max_Smoothing_Cycles_Curvature_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Max_Smoothing_Cycles_Normal_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Max_Substep_Cycles_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Min_Simple_Iterations.f90 modified: Sources/Shared/Control_Mod/Numerics/Number_Of_Piso_Corrections.f90 modified: Sources/Shared/Control_Mod/Numerics/Number_Of_Time_Steps.f90 modified: Sources/Shared/Control_Mod/Numerics/Pressure_Momentum_Coupling.f90 modified: Sources/Shared/Control_Mod/Numerics/Report_Volume_Balance.f90 modified: Sources/Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Energy.f90 modified: Sources/Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Momentum.f90 modified: Sources/Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Pressure.f90 modified: Sources/Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Scalars.f90 modified: Sources/Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Turbulence.f90 modified: Sources/Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Skewness_Correction_Vof.f90 modified: Sources/Shared/Control_Mod/Numerics/Time_Integration_Scheme.f90 modified: Sources/Shared/Control_Mod/Numerics/Time_Step.f90 modified: Sources/Shared/Control_Mod/Numerics/Tolerance_For_Gauss_Gradients.f90 modified: Sources/Shared/Control_Mod/Numerics/Tolerance_For_Simple_Algorithm.f90 modified: Sources/Shared/Control_Mod/Physics/Angular_Velocity_Vector.f90 modified: Sources/Shared/Control_Mod/Physics/Buoyancy.f90 modified: Sources/Shared/Control_Mod/Physics/Dynamic_Viscosity.f90 modified: Sources/Shared/Control_Mod/Physics/Extrapolate_Temperature_Exp.f90 modified: Sources/Shared/Control_Mod/Physics/Gravitational_Vector.f90 modified: Sources/Shared/Control_Mod/Physics/Heat_Capacity.f90 modified: Sources/Shared/Control_Mod/Physics/Heat_Transfer.f90 modified: Sources/Shared/Control_Mod/Physics/Hybrid_Les_Rans_Switch.f90 modified: Sources/Shared/Control_Mod/Physics/Interface_Tracking.f90 modified: Sources/Shared/Control_Mod/Physics/Latent_Heat.f90 modified: Sources/Shared/Control_Mod/Physics/Mass_Density.f90 modified: Sources/Shared/Control_Mod/Physics/Mass_Flow_Rates.f90 modified: Sources/Shared/Control_Mod/Physics/Mass_Transfer.f90 modified: Sources/Shared/Control_Mod/Physics/Max_Particles.f90 modified: Sources/Shared/Control_Mod/Physics/Number_Of_Domains.f90 modified: Sources/Shared/Control_Mod/Physics/Number_Of_Phases.f90 modified: Sources/Shared/Control_Mod/Physics/Number_Of_Scalars.f90 modified: Sources/Shared/Control_Mod/Physics/Number_Of_Swarm_Sub_Steps.f90 modified: Sources/Shared/Control_Mod/Physics/Particle_Tracking.f90 modified: Sources/Shared/Control_Mod/Physics/Phase_Capacities.f90 modified: Sources/Shared/Control_Mod/Physics/Phase_Conductivities.f90 modified: Sources/Shared/Control_Mod/Physics/Phase_Densities.f90 modified: Sources/Shared/Control_Mod/Physics/Phase_Viscosities.f90 modified: Sources/Shared/Control_Mod/Physics/Point_For_Monitoring_Planes.f90 modified: Sources/Shared/Control_Mod/Physics/Potential_Initialization.f90 modified: Sources/Shared/Control_Mod/Physics/Pressure_Drops.f90 modified: Sources/Shared/Control_Mod/Physics/Reference_Density.f90 modified: Sources/Shared/Control_Mod/Physics/Reference_Temperature.f90 modified: Sources/Shared/Control_Mod/Physics/Rough_Walls.f90 modified: Sources/Shared/Control_Mod/Physics/Roughness_Coefficient.f90 modified: Sources/Shared/Control_Mod/Physics/Saturation_Temperature.f90 modified: Sources/Shared/Control_Mod/Physics/Scalars_Diffusivity.f90 modified: Sources/Shared/Control_Mod/Physics/Smagorinsky_Constant.f90 modified: Sources/Shared/Control_Mod/Physics/Starting_Time_Step_For_Swarm_Computation.f90 modified: Sources/Shared/Control_Mod/Physics/Starting_Time_Step_For_Swarm_Statistics.f90 modified: Sources/Shared/Control_Mod/Physics/Starting_Time_Step_For_Turb_Statistics.f90 modified: Sources/Shared/Control_Mod/Physics/Surface_Tension.f90 modified: Sources/Shared/Control_Mod/Physics/Swarm_Coefficient_Of_Restitution.f90 modified: Sources/Shared/Control_Mod/Physics/Swarm_Density.f90 modified: Sources/Shared/Control_Mod/Physics/Swarm_Diameter.f90 modified: Sources/Shared/Control_Mod/Physics/Swarm_Subgrid_Scale_Model.f90 modified: Sources/Shared/Control_Mod/Physics/Thermal_Conductivity.f90 modified: Sources/Shared/Control_Mod/Physics/Track_Front.f90 modified: Sources/Shared/Control_Mod/Physics/Track_Surface.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulence_Model.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulence_Model_Variant.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulent_Heat_Flux_Model.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulent_Prandtl_Number.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulent_Scalar_Flux_Model.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulent_Schmidt_Number.f90 modified: Sources/Shared/Control_Mod/Physics/Volume_Expansion_Coefficient.f90

On branch bojan_more_robust_communicator modified: Process/Backup_Mod/Load.f90 modified: Process/Info_Mod/Start_Info.f90 modified: Process/Main_Pro.f90 modified: Process/Process_Mod/Compute_Pressure.f90 modified: Process/Read_Controls_Mod/Native_Solvers.f90 modified: Process/Vof_Mod/Core/Solve_System.f90 modified: Shared/Control_Mod.f90 modified: Shared/Control_Mod/Input_Output/Backup_Save_Interval.f90 modified: Shared/Control_Mod/Input_Output/Load_Backup_Name.f90 modified: Shared/Control_Mod/Input_Output/Load_Initial_Solution_Name.f90 modified: Shared/Control_Mod/Input_Output/Problem_Name.f90 modified: Shared/Control_Mod/Input_Output/Profiler_Info.f90 modified: Shared/Control_Mod/Input_Output/Results_Save_Interval.f90 modified: Shared/Control_Mod/Input_Output/Save_Backup_Name.f90 modified: Shared/Control_Mod/Input_Output/Save_Initial_Condition.f90 modified: Shared/Control_Mod/Input_Output/Save_Initial_Solution_Name.f90 modified: Shared/Control_Mod/Input_Output/Save_Results_At_Boundaries.f90 modified: Shared/Control_Mod/Input_Output/Swarm_Save_Interval.f90 modified: Shared/Control_Mod/Input_Output/Wall_Time_Max_Hours.f90 modified: Shared/Control_Mod/Native/Max_Iterations_For_Energy_Solver.f90 modified: Shared/Control_Mod/Native/Max_Iterations_For_Momentum_Solver.f90 modified: Shared/Control_Mod/Native/Max_Iterations_For_Potential_Solver.f90 renamed: Shared/Control_Mod/Native/Max_Iterations_For_Presssure_Solver.f90 -> Shared/Control_Mod/Native/Max_Iterations_For_Pressure_Solver.f90 modified: Shared/Control_Mod/Native/Max_Iterations_For_Scalars_Solver.f90 modified: Shared/Control_Mod/Native/Max_Iterations_For_Turbulence_Solver.f90 modified: Shared/Control_Mod/Native/Max_Iterations_For_Vof_Solver.f90 modified: Shared/Control_Mod/Native/Max_Iterations_For_Wall_Distance_Solver.f90 modified: Shared/Control_Mod/Native/Normalization_For_Energy_Solver.f90 modified: Shared/Control_Mod/Native/Normalization_For_Momentum_Solver.f90 modified: Shared/Control_Mod/Native/Normalization_For_Pressure_Solver.f90 modified: Shared/Control_Mod/Native/Normalization_For_Scalars_Solver.f90 modified: Shared/Control_Mod/Native/Normalization_For_Turbulence_Solver.f90 modified: Shared/Control_Mod/Native/Preconditioner_For_System_Matrix.f90 modified: Shared/Control_Mod/Native/Solver_For_Energy.f90 modified: Shared/Control_Mod/Native/Solver_For_Momentum.f90 modified: Shared/Control_Mod/Native/Solver_For_Potential.f90 modified: Shared/Control_Mod/Native/Solver_For_Pressure.f90 modified: Shared/Control_Mod/Native/Solver_For_Scalars.f90 modified: Shared/Control_Mod/Native/Solver_For_Turbulence.f90 modified: Shared/Control_Mod/Native/Solver_For_Vof.f90 modified: Shared/Control_Mod/Native/Solver_For_Wall_Distance.f90 modified: Shared/Control_Mod/Native/Tolerance_For_Energy_Solver.f90 modified: Shared/Control_Mod/Native/Tolerance_For_Momentum_Solver.f90 modified: Shared/Control_Mod/Native/Tolerance_For_Potential_Solver.f90 modified: Shared/Control_Mod/Native/Tolerance_For_Pressure_Solver.f90 modified: Shared/Control_Mod/Native/Tolerance_For_Scalars_Solver.f90 modified: Shared/Control_Mod/Native/Tolerance_For_Turbulence_Solver.f90 modified: Shared/Control_Mod/Native/Tolerance_For_Vof_Solver.f90 modified: Shared/Control_Mod/Native/Tolerance_For_Wall_Distance_Solver.f90 modified: Shared/Profiler_Mod/Statistics.f90

On branch bojan_more_robust_communicator modified: Process/Field_Mod.f90 renamed: Process/Field_Mod/Utilities/Report_Volume_Balance.f90 -> Process/Field_Mod/Utilities/Report_Vol_Balance.f90 renamed: Process/Field_Mod/Utilities/Report_Volume_Balance_Start.f90 -> Process/Field_Mod/Utilities/Report_Vol_Balance_Start.f90 renamed: Process/Field_Mod/Utilities/Report_Volume_Balance_Stop.f90 -> Process/Field_Mod/Utilities/Report_Vol_Balance_Stop.f90 modified: Process/Main_Pro.f90 modified: Process/Process_Mod/Compute_Pressure.f90 modified: Process/Read_Controls_Mod/Numerical_Schemes.f90 modified: Shared/Control_Mod.f90 modified: Shared/Control_Mod/Numerics/Advection_Scheme_For_Energy.f90 modified: Shared/Control_Mod/Numerics/Advection_Scheme_For_Momentum.f90 modified: Shared/Control_Mod/Numerics/Advection_Scheme_For_Scalars.f90 modified: Shared/Control_Mod/Numerics/Advection_Scheme_For_Turbulence.f90 modified: Shared/Control_Mod/Numerics/Advection_Scheme_For_Vof.f90 modified: Shared/Control_Mod/Numerics/Blending_Coefficient_For_Energy.f90 modified: Shared/Control_Mod/Numerics/Blending_Coefficient_For_Momentum.f90 modified: Shared/Control_Mod/Numerics/Blending_Coefficient_For_Scalars.f90 modified: Shared/Control_Mod/Numerics/Blending_Coefficient_For_Turbulence.f90 modified: Shared/Control_Mod/Numerics/Blending_Coefficient_For_Vof.f90 modified: Shared/Control_Mod/Numerics/Choi_Correction.f90 modified: Shared/Control_Mod/Numerics/Gradient_Method_For_Energy.f90 modified: Shared/Control_Mod/Numerics/Gradient_Method_For_Momentum.f90 modified: Shared/Control_Mod/Numerics/Gradient_Method_For_Pressure.f90 modified: Shared/Control_Mod/Numerics/Gradient_Method_For_Scalars.f90 modified: Shared/Control_Mod/Numerics/Gradient_Method_For_Turbulence.f90 modified: Shared/Control_Mod/Numerics/Gradient_Method_For_Vof.f90 modified: Shared/Control_Mod/Numerics/Gradient_Method_For_Wall_Distance.f90 modified: Shared/Control_Mod/Numerics/Gu_Correction.f90 modified: Shared/Control_Mod/Numerics/Max_Correction_Cycles_Beta_Vof.f90 modified: Shared/Control_Mod/Numerics/Max_Courant_Vof.f90 modified: Shared/Control_Mod/Numerics/Max_Gauss_Gradients_Iterations.f90 modified: Shared/Control_Mod/Numerics/Max_Least_Squares_Gradients_Iterations.f90 modified: Shared/Control_Mod/Numerics/Max_Simple_Iterations.f90 modified: Shared/Control_Mod/Numerics/Max_Smoothing_Cycles_Curvature_Vof.f90 modified: Shared/Control_Mod/Numerics/Max_Smoothing_Cycles_Normal_Vof.f90 modified: Shared/Control_Mod/Numerics/Max_Substep_Cycles_Vof.f90 modified: Shared/Control_Mod/Numerics/Min_Simple_Iterations.f90 modified: Shared/Control_Mod/Numerics/Number_Of_Piso_Corrections.f90 modified: Shared/Control_Mod/Numerics/Number_Of_Time_Steps.f90 modified: Shared/Control_Mod/Numerics/Pressure_Momentum_Coupling.f90 modified: Shared/Control_Mod/Numerics/Report_Volume_Balance.f90 modified: Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Energy.f90 modified: Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Momentum.f90 modified: Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Pressure.f90 modified: Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Scalars.f90 modified: Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Turbulence.f90 modified: Shared/Control_Mod/Numerics/Simple_Underrelaxation_For_Vof.f90 modified: Shared/Control_Mod/Numerics/Skewness_Correction_Vof.f90 modified: Shared/Control_Mod/Numerics/Time_Integration_Scheme.f90 modified: Shared/Control_Mod/Numerics/Time_Step.f90 modified: Shared/Control_Mod/Numerics/Tolerance_For_Gauss_Gradients.f90 modified: Shared/Control_Mod/Numerics/Tolerance_For_Simple_Algorithm.f90

This was the last, but it also proved to be the most sensitive step. If something goes wrong, go back to the previouse check-in. On branch bojan_more_robust_communicator modified: Process/Field_Mod.f90 modified: Process/Field_Mod/Utilities/Potential_Initialization.f90 modified: Process/Main_Pro.f90 modified: Process/Process_Mod/Compute_Scalar.f90 modified: Process/Read_Controls_Mod/Boundary_Conditions.f90 modified: Process/Read_Controls_Mod/Physical_Models.f90 modified: Process/Read_Controls_Mod/Physical_Properties.f90 modified: Process/Turb_Mod.f90 modified: Process/Turb_Mod/Calculate_Heat_Flux.f90 modified: Process/Turb_Mod/Calculate_Scalar_Flux.f90 renamed: Process/Turb_Mod/Roughness_Coefficient.f90 -> Process/Turb_Mod/Roughness_Coeff.f90 modified: Process/Turb_Mod/Src_Eps_K_Eps.f90 modified: Process/Turb_Mod/Src_Eps_K_Eps_Zeta_F.f90 modified: Process/Turb_Mod/Src_Kin_K_Eps.f90 modified: Process/Turb_Mod/Src_Kin_K_Eps_Zeta_F.f90 modified: Process/Turb_Mod/Src_T2.f90 modified: Process/Turb_Mod/Vis_T_K_Eps.f90 modified: Process/Turb_Mod/Vis_T_K_Eps_Zeta_F.f90 modified: Process/Turb_Mod/Vis_T_Subgrid.f90 modified: Shared/Control_Mod.f90 modified: Shared/Control_Mod/Max_Threads.f90 modified: Shared/Control_Mod/Physics/Angular_Velocity_Vector.f90 modified: Shared/Control_Mod/Physics/Buoyancy.f90 modified: Shared/Control_Mod/Physics/Dynamic_Viscosity.f90 modified: Shared/Control_Mod/Physics/Extrapolate_Temperature_Exp.f90 modified: Shared/Control_Mod/Physics/Gravitational_Vector.f90 modified: Shared/Control_Mod/Physics/Heat_Capacity.f90 modified: Shared/Control_Mod/Physics/Heat_Transfer.f90 modified: Shared/Control_Mod/Physics/Hybrid_Les_Rans_Switch.f90 modified: Shared/Control_Mod/Physics/Interface_Tracking.f90 modified: Shared/Control_Mod/Physics/Latent_Heat.f90 modified: Shared/Control_Mod/Physics/Mass_Density.f90 modified: Shared/Control_Mod/Physics/Mass_Flow_Rates.f90 modified: Shared/Control_Mod/Physics/Mass_Transfer.f90 modified: Shared/Control_Mod/Physics/Max_Particles.f90 modified: Shared/Control_Mod/Physics/Number_Of_Domains.f90 modified: Shared/Control_Mod/Physics/Number_Of_Phases.f90 modified: Shared/Control_Mod/Physics/Number_Of_Scalars.f90 modified: Shared/Control_Mod/Physics/Number_Of_Swarm_Sub_Steps.f90 modified: Shared/Control_Mod/Physics/Particle_Tracking.f90 modified: Shared/Control_Mod/Physics/Phase_Capacities.f90 modified: Shared/Control_Mod/Physics/Phase_Conductivities.f90 modified: Shared/Control_Mod/Physics/Phase_Densities.f90 modified: Shared/Control_Mod/Physics/Phase_Viscosities.f90 modified: Shared/Control_Mod/Physics/Point_For_Monitoring_Planes.f90 modified: Shared/Control_Mod/Physics/Potential_Initialization.f90 modified: Shared/Control_Mod/Physics/Pressure_Drops.f90 modified: Shared/Control_Mod/Physics/Reference_Density.f90 modified: Shared/Control_Mod/Physics/Reference_Temperature.f90 modified: Shared/Control_Mod/Physics/Rough_Walls.f90 modified: Shared/Control_Mod/Physics/Roughness_Coefficient.f90 modified: Shared/Control_Mod/Physics/Saturation_Temperature.f90 modified: Shared/Control_Mod/Physics/Scalars_Diffusivity.f90 modified: Shared/Control_Mod/Physics/Smagorinsky_Constant.f90 modified: Shared/Control_Mod/Physics/Starting_Time_Step_For_Swarm_Computation.f90 modified: Shared/Control_Mod/Physics/Starting_Time_Step_For_Swarm_Statistics.f90 modified: Shared/Control_Mod/Physics/Starting_Time_Step_For_Turb_Statistics.f90 modified: Shared/Control_Mod/Physics/Surface_Tension.f90 modified: Shared/Control_Mod/Physics/Swarm_Coefficient_Of_Restitution.f90 modified: Shared/Control_Mod/Physics/Swarm_Density.f90 modified: Shared/Control_Mod/Physics/Swarm_Diameter.f90 modified: Shared/Control_Mod/Physics/Swarm_Subgrid_Scale_Model.f90 modified: Shared/Control_Mod/Physics/Thermal_Conductivity.f90 modified: Shared/Control_Mod/Physics/Track_Front.f90 modified: Shared/Control_Mod/Physics/Track_Surface.f90 modified: Shared/Control_Mod/Physics/Turbulence_Model.f90 modified: Shared/Control_Mod/Physics/Turbulence_Model_Variant.f90 modified: Shared/Control_Mod/Physics/Turbulent_Heat_Flux_Model.f90 modified: Shared/Control_Mod/Physics/Turbulent_Prandtl_Number.f90 modified: Shared/Control_Mod/Physics/Turbulent_Scalar_Flux_Model.f90 modified: Shared/Control_Mod/Physics/Turbulent_Schmidt_Number.f90 modified: Shared/Control_Mod/Physics/Volume_Expansion_Coefficient.f90

This was the last, but it also proved to be the most sensitive step. If something goes wrong, go back to the previouse check-in. On branch bojan_more_robust_communicator modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Process/Field_Mod.f90 modified: Sources/Process/Field_Mod/Utilities/Potential_Initialization.f90 modified: Sources/Process/Main_Pro.f90 modified: Sources/Process/Process_Mod/Compute_Scalar.f90 modified: Sources/Process/Read_Controls_Mod.f90 modified: Sources/Process/Read_Controls_Mod/Boundary_Conditions.f90 modified: Sources/Process/Read_Controls_Mod/Physical_Models.f90 modified: Sources/Process/Read_Controls_Mod/Physical_Properties.f90 renamed: Sources/Process/Read_Controls_Mod/Linear_Solvers.f90 -> Sources/Process/Read_Controls_Mod/Solvers.f90 modified: Sources/Process/Turb_Mod.f90 modified: Sources/Process/Turb_Mod/Calculate_Heat_Flux.f90 modified: Sources/Process/Turb_Mod/Calculate_Scalar_Flux.f90 renamed: Sources/Process/Turb_Mod/Roughness_Coefficient.f90 -> Sources/Process/Turb_Mod/Roughness_Coeff.f90 modified: Sources/Process/Turb_Mod/Src_Eps_K_Eps.f90 modified: Sources/Process/Turb_Mod/Src_Eps_K_Eps_Zeta_F.f90 modified: Sources/Process/Turb_Mod/Src_Kin_K_Eps.f90 modified: Sources/Process/Turb_Mod/Src_Kin_K_Eps_Zeta_F.f90 modified: Sources/Process/Turb_Mod/Src_T2.f90 modified: Sources/Process/Turb_Mod/Vis_T_K_Eps.f90 modified: Sources/Process/Turb_Mod/Vis_T_K_Eps_Zeta_F.f90 modified: Sources/Process/Turb_Mod/Vis_T_Subgrid.f90 modified: Sources/Shared/Control_Mod.f90 modified: Sources/Shared/Control_Mod/Linear_Solvers.f90 modified: Sources/Shared/Control_Mod/Max_Threads.f90 modified: Sources/Shared/Control_Mod/Physics/Angular_Velocity_Vector.f90 modified: Sources/Shared/Control_Mod/Physics/Buoyancy.f90 modified: Sources/Shared/Control_Mod/Physics/Dynamic_Viscosity.f90 modified: Sources/Shared/Control_Mod/Physics/Extrapolate_Temperature_Exp.f90 modified: Sources/Shared/Control_Mod/Physics/Gravitational_Vector.f90 modified: Sources/Shared/Control_Mod/Physics/Heat_Capacity.f90 modified: Sources/Shared/Control_Mod/Physics/Heat_Transfer.f90 modified: Sources/Shared/Control_Mod/Physics/Hybrid_Les_Rans_Switch.f90 modified: Sources/Shared/Control_Mod/Physics/Interface_Tracking.f90 modified: Sources/Shared/Control_Mod/Physics/Latent_Heat.f90 modified: Sources/Shared/Control_Mod/Physics/Mass_Density.f90 modified: Sources/Shared/Control_Mod/Physics/Mass_Flow_Rates.f90 modified: Sources/Shared/Control_Mod/Physics/Mass_Transfer.f90 modified: Sources/Shared/Control_Mod/Physics/Max_Particles.f90 modified: Sources/Shared/Control_Mod/Physics/Number_Of_Domains.f90 modified: Sources/Shared/Control_Mod/Physics/Number_Of_Phases.f90 modified: Sources/Shared/Control_Mod/Physics/Number_Of_Scalars.f90 modified: Sources/Shared/Control_Mod/Physics/Number_Of_Swarm_Sub_Steps.f90 modified: Sources/Shared/Control_Mod/Physics/Particle_Tracking.f90 modified: Sources/Shared/Control_Mod/Physics/Phase_Capacities.f90 modified: Sources/Shared/Control_Mod/Physics/Phase_Conductivities.f90 modified: Sources/Shared/Control_Mod/Physics/Phase_Densities.f90 modified: Sources/Shared/Control_Mod/Physics/Phase_Viscosities.f90 modified: Sources/Shared/Control_Mod/Physics/Point_For_Monitoring_Planes.f90 modified: Sources/Shared/Control_Mod/Physics/Potential_Initialization.f90 modified: Sources/Shared/Control_Mod/Physics/Pressure_Drops.f90 modified: Sources/Shared/Control_Mod/Physics/Reference_Density.f90 modified: Sources/Shared/Control_Mod/Physics/Reference_Temperature.f90 modified: Sources/Shared/Control_Mod/Physics/Rough_Walls.f90 modified: Sources/Shared/Control_Mod/Physics/Roughness_Coefficient.f90 modified: Sources/Shared/Control_Mod/Physics/Saturation_Temperature.f90 modified: Sources/Shared/Control_Mod/Physics/Scalars_Diffusivity.f90 modified: Sources/Shared/Control_Mod/Physics/Smagorinsky_Constant.f90 modified: Sources/Shared/Control_Mod/Physics/Starting_Time_Step_For_Swarm_Computation.f90 modified: Sources/Shared/Control_Mod/Physics/Starting_Time_Step_For_Swarm_Statistics.f90 modified: Sources/Shared/Control_Mod/Physics/Starting_Time_Step_For_Turb_Statistics.f90 modified: Sources/Shared/Control_Mod/Physics/Surface_Tension.f90 modified: Sources/Shared/Control_Mod/Physics/Swarm_Coefficient_Of_Restitution.f90 modified: Sources/Shared/Control_Mod/Physics/Swarm_Density.f90 modified: Sources/Shared/Control_Mod/Physics/Swarm_Diameter.f90 modified: Sources/Shared/Control_Mod/Physics/Swarm_Subgrid_Scale_Model.f90 modified: Sources/Shared/Control_Mod/Physics/Thermal_Conductivity.f90 modified: Sources/Shared/Control_Mod/Physics/Track_Front.f90 modified: Sources/Shared/Control_Mod/Physics/Track_Surface.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulence_Model.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulence_Model_Variant.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulent_Heat_Flux_Model.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulent_Prandtl_Number.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulent_Scalar_Flux_Model.f90 modified: Sources/Shared/Control_Mod/Physics/Turbulent_Schmidt_Number.f90 modified: Sources/Shared/Control_Mod/Physics/Volume_Expansion_Coefficient.f90

Conflicts: Sources/Shared/Control_Mod.f90

On branch bojan_more_robust_communicator modified: Documentation/Syntax/.vim/syntax/fortran.vim

These are Comm_Mod_Start, Comm_Mod_End and Comm_Mod_Wait which became Global % Start_Parallel, Global % End_Parallel and Global % Wait. This was also a good chance to expand the usage of Message_Mod On branch bojan_more_robust_communicator modified: Sources/Process/Interface_Mod/Create.f90 modified: Sources/Process/Main_Pro.f90 modified: Sources/Process/Process_Mod/Initialize_Variables.f90 modified: Sources/Process/Read_Controls_Mod/Petsc_Solvers.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Results.f90 modified: Sources/Process/Surf_Mod/Handle_4_Points.f90 modified: Sources/Process/Surf_Mod/Handle_5_Points.f90 modified: Sources/Process/Surf_Mod/Handle_6_Points.f90 modified: Sources/Process/Swarm_Mod/Allocate_Swarm.f90 modified: Sources/Shared/Assert_Mod/Handle_Assert.f90 modified: Sources/Shared/Comm_Mod.f90 renamed: Sources/Shared/Comm_Mod/Parallel/End.f90 -> Sources/Shared/Comm_Mod/Parallel/End_Parallel.f90 renamed: Sources/Shared/Comm_Mod/Parallel/Start.f90 -> Sources/Shared/Comm_Mod/Parallel/Start_Parallel.f90 modified: Sources/Shared/Comm_Mod/Parallel/Wait.f90 renamed: Sources/Shared/Comm_Mod/Sequential/End.f90 -> Sources/Shared/Comm_Mod/Sequential/End_Parallel.f90 renamed: Sources/Shared/Comm_Mod/Sequential/Start.f90 -> Sources/Shared/Comm_Mod/Sequential/Start_Parallel.f90 modified: Sources/Shared/Comm_Mod/Sequential/Wait.f90 modified: Sources/Shared/Message_Mod/Error.f90

On branch bojan_more_robust_communicator modified: Tests/Functionality/Communication/User_Mod/Beginning_Of_Time_Step.f90 modified: Tests/Functionality/Gradients/User_Mod/Initialize_Variables.f90 modified: Tests/Functionality/Omp/User_Mod/Beginning_Of_Simulation.f90 modified: Tests/Hybrid_Les_Rans/Channel_Re_Tau_2000/Uniform_Mesh/User_Mod/Save_Results.f90 modified: Tests/Laminar/Accuracy_Test/Channel_Re_2000/User_Mod/Save_Results.f90 modified: Tests/Laminar/Cylinder/Vertical/User_Mod/Save_Results.f90 modified: Tests/Laminar/Flat_Plate/User_Mod/Plain_Nu.f90 modified: Tests/Les/Barc/User_Mod/Beginning_Of_Simulation.f90 modified: Tests/Les/Channel_Re_Tau_180/Periodic_Domain/User_Mod/Save_Results.f90 modified: Tests/Les/Channel_Re_Tau_180/User_Mod/Save_Results.f90 modified: Tests/Les/Forrest/User_Mod/Save_Results.f90 modified: Tests/Les/Pipe_Re_Tau_180/User_Mod/Save_Results.f90 modified: Tests/Les/Rayleigh_Benard_Convection_Ra_10e09/User_Mod/Save_Results.f90 modified: Tests/Manual/Channel_Re_Tau_590/Stretched_Mesh/User_Mod/Save_Results.f90 modified: Tests/Manual/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Impinging_Jet_Nu.f90 modified: Tests/Manual/Matrix_Of_Cubes/User_Mod/Beginning_Of_Simulation.f90 modified: Tests/Rans/Backstep_Re_28000/User_Mod/Backstep_Cf_St.f90 modified: Tests/Rans/Channel_Re_Tau_590/Rsm/User_Mod/Save_Results.f90 modified: Tests/Rans/Channel_Re_Tau_590/Stretched_Mesh/User_Mod/Save_Results.f90 modified: Tests/Rans/Channel_Re_Tau_590/Uniform_Mesh/User_Mod/Save_Results.f90 modified: Tests/Rans/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Impinging_Jet_Nu.f90 modified: Tests/Rans/Pipe_Re_Tau_550/User_Mod/Save_Results.f90 modified: Tests/Rans/Rayleigh_Benard_Convection_Ra_10e09/User_Mod/Save_Results.f90 modified: Tests/Swarm/Bend_90_Degrees/User_Mod/Insert_Particles.f90 modified: Tests/Swarm/Channel_Re_Tau_590/User_Mod/End_Of_Time_Step.f90 modified: Tests/Swarm/Channel_Re_Tau_590/User_Mod/Save_Results.f90 modified: Tests/Swarm/Channel_Re_Tau_590/User_Mod/Save_Swarm.f90 modified: Tests/Swarm/Three_Phase_Flow/User_Mod/Insert_Particles.f90

On branch bojan_more_robust_communicator modified: Shared/Control_Mod.f90 modified: Shared/Control_Mod/Basic_Functions/Open_Domain_File.f90 modified: Shared/Control_Mod/Basic_Functions/Open_Root_File.f90 modified: Shared/Control_Mod/Basic_Functions/Position_At_One_Key.f90 modified: Shared/Control_Mod/Basic_Functions/Position_At_Three_Keys.f90 modified: Shared/Control_Mod/Basic_Functions/Position_At_Two_Keys.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Char_Item.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Char_Item_On.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Int_Item.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Int_Item_On.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Real_Item.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Real_Item_On.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Real_Vector.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Real_Vector_On.f90 modified: Shared/Control_Mod/Basic_Functions/Read_Strings_On.f90 modified: Shared/Control_Mod/Basic_Functions/Switch_To_Domain.f90 modified: Shared/Control_Mod/Basic_Functions/Switch_To_Root.f90

OK, so here is the story. Gnu compiler was complaining about the static size of Tokenizer, saying it was too big. In order to reduce it, I did three things: 1. Reduce MAX_TOKENS from 2048 to 32 (I tried 16, but it was too short) 2. Detached the size of the line from MAX_TOKENS*2, which is not the best practicle anyway because it is implicit (line one paramenter for two different things to DL (currently at 160). 3. Use an assertion inside the Tokenizer to check if the number of tokens is sufficient. As a consequence of this, makefiles also had to be up- dated. Whenever browsing through Tokenizer's strings, I use its length as the boundary, not any longer MAX_TOKENS*2. One more detai: MAX_TOKENS is now in the sytnax file for T-Flows. Compiler warning are gone now. Thorough tests are not yet conducted. On branch bojan_more_robust_communicator modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Convert/Convert_Mod/Load_Gmsh.f90 modified: Sources/Convert/makefile modified: Sources/Convert/makefile_explicit_dependencies modified: Sources/Divide/makefile modified: Sources/Divide/makefile_explicit_dependencies modified: Sources/Generate/makefile modified: Sources/Generate/makefile_explicit_dependencies modified: Sources/Shared/File_Mod/Read_Line.f90 modified: Sources/Shared/Grid_Mod/Print_Regions_List.f90 modified: Sources/Shared/Tokenizer_Mod.f90 modified: Sources/Shared/Tokenizer_Mod/Parse.f90

Going back to 968a1d8 On branch bojan_more_robust_communicator modified: Tokenizer_Mod.f90

In cases of simulaitons with multiple domains, in particulart when mutliple domains are meshed concurrently in GMSH to ensure comformity but some are deleted just before saving the files, the error picked here can occur. However, in that case it is really not an error but rather some faces are hanging blank on purpose. On branch bojan_more_robust_communicator modified: Convert_Mod/Find_Parents.f90

OK, so it was not the size of the Tokenizer about which compiler was complaining, but the size of the Tokenizer when it is inisde another procedure, this time it was Frameless in Message_Mod. To resolve the warning, I ditched the local Tokenizer from Frameless and use global (singleton) one called "Line". Also, the definition of the line had to be moved, from File_Mod to Tokenizer_Mod, where it should have naturally been all along. On branch bojan_more_robust_communicator modified: Shared/File_Mod.f90 modified: Shared/Message_Mod/Frameless.f90 modified: Shared/Tokenizer_Mod.f90

when extracting cells from grid. The way it was before, the Front elements were pointing from VOF=1 towards VOF=0, which is wrong. Read also the comments close to the part of the code which changed. There is no doubt that the whole thing is still a bit nebulous, not surprising when one uses third party libraries, they are always shrouded in a bit of mystery. On branch bojan_more_robust_communicator modified: Shared/Polyhedron_Mod/Extract_From_Grid.f90

Funny thing ... in order to resolve this, I had to introduce new data member into Grid_Mod called "rank", which is just a number holding the domain number which grid represents. This rank is set in Load_Dim (from Grid_Mod) and special assertions are introduced in File_Mod/Set_Name to make sure the rank is not accidentaly left at zero. On branch bojan_more_robust_communicator modified: Process/Front_Mod/Save_Debug_Front_Vtu.f90 modified: Shared/File_Mod/Set_Name.f90 modified: Shared/Grid_Mod.f90 modified: Shared/Grid_Mod/Load_Dim.f90

On branch bojan_more_robust_communicator modified: Documentation/Syntax/.vim/syntax/control.vim

On branch bojan_more_robust_communicator modified: Documentation/Syntax/.vim/syntax/fortran.vim

Date: Sun Apr 16 11:55:55 2023 +0200 On branch bojan_time_module modified: Sources/Process/Backup_Mod/Load.f90 modified: Sources/Process/Backup_Mod/Save.f90 modified: Sources/Process/Backup_Mod/Time_To_Save_Backup.f90 modified: Sources/Process/Field_Mod.f90 modified: Sources/Process/Field_Mod/Utilities/Report_Vol_Balance.f90 modified: Sources/Process/Field_Mod/Utilities/Report_Vol_Balance_Start.f90 modified: Sources/Process/Main_Pro.f90 modified: Sources/Process/Process_Mod/Compute_Energy.f90 modified: Sources/Process/Process_Mod/Compute_Momentum.f90 modified: Sources/Process/Process_Mod/Compute_Pressure.f90 modified: Sources/Process/Process_Mod/Compute_Scalar.f90 modified: Sources/Process/Process_Mod/Convective_Outflow.f90 modified: Sources/Process/Process_Mod/Correct_Velocity.f90 modified: Sources/Process/Process_Mod/Piso_Algorithm.f90 modified: Sources/Process/Results_Mod/Main_Results.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Front.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Results.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Surf.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Swarm.f90 modified: Sources/Process/Results_Mod/Time_To_Save_Results.f90 modified: Sources/Process/Results_Mod/Time_To_Save_Swarm.f90 modified: Sources/Process/Swarm_Mod/Advance_Particles.f90 modified: Sources/Process/Swarm_Mod/Calculate_Mean.f90 new file: Sources/Process/Time_Mod.f90 new file: Sources/Process/Time_Mod/Curr_Dt.f90 new file: Sources/Process/Time_Mod/First_Dt.f90 new file: Sources/Process/Time_Mod/Get_Time.f90 new file: Sources/Process/Time_Mod/Increase_Time.f90 new file: Sources/Process/Time_Mod/Last_Dt.f90 new file: Sources/Process/Time_Mod/Needs_More_Steps.f90 new file: Sources/Process/Time_Mod/Set_Curr_Dt.f90 new file: Sources/Process/Time_Mod/Set_First_Dt.f90 new file: Sources/Process/Time_Mod/Set_Last_Dt.f90 new file: Sources/Process/Time_Mod/Set_Time.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Energy.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Momentum.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Pressure.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Scalar.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Vof.f90 modified: Sources/Process/User_Mod/Beginning_Of_Correct_Velocity.f90 modified: Sources/Process/User_Mod/Beginning_Of_Iteration.f90 modified: Sources/Process/User_Mod/Beginning_Of_Simulation.f90 modified: Sources/Process/User_Mod/Beginning_Of_Time_Step.f90 modified: Sources/Process/User_Mod/Calculate_Mean.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Energy.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Momentum.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Pressure.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Scalar.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Vof.f90 modified: Sources/Process/User_Mod/End_Of_Correct_Velocity.f90 modified: Sources/Process/User_Mod/End_Of_Iteration.f90 modified: Sources/Process/User_Mod/End_Of_Simulation.f90 modified: Sources/Process/User_Mod/End_Of_Time_Step.f90 modified: Sources/Process/User_Mod/Insert_Particles.f90 modified: Sources/Process/User_Mod/Save_Results.f90 modified: Sources/Process/User_Mod/Save_Swarm.f90 modified: Tests/Functionality/Communication/User_Mod/Beginning_Of_Time_Step.f90 modified: Tests/Functionality/Omp/User_Mod/Beginning_Of_Simulation.f90 modified: Tests/Hybrid_Les_Rans/Channel_Re_Tau_2000/Uniform_Mesh/User_Mod/End_Of_Time_Step.f90 modified: Tests/Hybrid_Les_Rans/Channel_Re_Tau_2000/Uniform_Mesh/User_Mod/Save_Results.f90 modified: Tests/Laminar/Accuracy_Test/Channel_Re_2000/User_Mod/End_Of_Time_Step.f90 modified: Tests/Laminar/Accuracy_Test/Channel_Re_2000/User_Mod/Save_Results.f90 modified: Tests/Laminar/Cavity/Thermally_Driven/Conjugate/User_Mod/End_Of_Time_Step.f90 modified: Tests/Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/User_Mod/Beginning_Of_Simulation.f90 modified: Tests/Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/User_Mod/Beginning_Of_Time_Step.f90 modified: Tests/Laminar/Cylinder/Vertical/User_Mod/Beginning_Of_Iteration.f90 modified: Tests/Laminar/Cylinder/Vertical/User_Mod/Save_Results.f90 modified: Tests/Laminar/Flat_Plate/User_Mod/Plain_Nu.f90 modified: Tests/Laminar/Flat_Plate/User_Mod/Plain_Profiles.f90 modified: Tests/Laminar/Flat_Plate/User_Mod/Save_Results.f90 modified: Tests/Laminar/Membrane/2_Domains/User_Mod/Beginning_Of_Iteration.f90 modified: Tests/Les/Barc/User_Mod/Beginning_Of_Simulation.f90 modified: Tests/Les/Channel_Re_Tau_180/Periodic_Domain/User_Mod/End_Of_Time_Step.f90 modified: Tests/Les/Channel_Re_Tau_180/Periodic_Domain/User_Mod/Save_Results.f90 modified: Tests/Les/Channel_Re_Tau_180/User_Mod/Save_Results.f90 modified: Tests/Les/Forrest/User_Mod/Beginning_Of_Time_Step.f90 modified: Tests/Les/Forrest/User_Mod/End_Of_Time_Step.f90 modified: Tests/Les/Forrest/User_Mod/Save_Results.f90 modified: Tests/Les/Pipe_Re_Tau_180/User_Mod/End_Of_Time_Step.f90 modified: Tests/Les/Pipe_Re_Tau_180/User_Mod/Save_Results.f90 modified: Tests/Les/Rayleigh_Benard_Convection_Ra_10e09/User_Mod/Save_Results.f90 modified: Tests/Manual/Channel_Re_Tau_590/Stretched_Mesh/User_Mod/Save_Results.f90 modified: Tests/Manual/Conjugate/User_Mod/End_Of_Time_Step.f90 modified: Tests/Manual/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Impinging_Jet_Nu.f90 modified: Tests/Manual/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Impinging_Jet_Profiles.f90 modified: Tests/Manual/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Results.f90 modified: Tests/Manual/Inflows/Option_4/User_Mod/End_Of_Time_Step.f90 modified: Tests/Manual/Matrix_Of_Cubes/User_Mod/Beginning_Of_Simulation.f90 modified: Tests/Manual/Rising_Bubble/User_Mod/End_Of_Time_Step.f90 modified: Tests/Manual/Thermally_Driven/Varible/User_Mod/Beginning_Of_Simulation.f90 modified: Tests/Manual/Thermally_Driven/Varible/User_Mod/Beginning_Of_Time_Step.f90 modified: Tests/Rans/Backstep_Re_28000/User_Mod/Backstep_Cf_St.f90 modified: Tests/Rans/Backstep_Re_28000/User_Mod/Backstep_Profiles.f90 modified: Tests/Rans/Backstep_Re_28000/User_Mod/Save_Results.f90 modified: Tests/Rans/Channel_Re_Tau_590/Rsm/User_Mod/Save_Results.f90 modified: Tests/Rans/Channel_Re_Tau_590/Stretched_Mesh/User_Mod/Save_Results.f90 modified: Tests/Rans/Channel_Re_Tau_590/Uniform_Mesh/User_Mod/Save_Results.f90 modified: Tests/Rans/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Impinging_Jet_Nu.f90 modified: Tests/Rans/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Impinging_Jet_Profiles.f90 modified: Tests/Rans/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Results.f90 modified: Tests/Rans/Pipe_Re_Tau_550/User_Mod/Save_Results.f90 modified: Tests/Rans/Rayleigh_Benard_Convection_Ra_10e09/User_Mod/Save_Results.f90 modified: Tests/Swarm/Bend_90_Degrees/User_Mod/Insert_Particles.f90 modified: Tests/Swarm/Channel_Re_Tau_590/User_Mod/End_Of_Time_Step.f90 modified: Tests/Swarm/Channel_Re_Tau_590/User_Mod/Insert_Particles.f90 modified: Tests/Swarm/Channel_Re_Tau_590/User_Mod/Save_Results.f90 modified: Tests/Swarm/Channel_Re_Tau_590/User_Mod/Save_Swarm.f90 modified: Tests/Swarm/Cylinders_Periodic/User_Mod/Insert_Particles.f90 modified: Tests/Swarm/Rod_Bundle_Polyhedral/User_Mod/Insert_Particles.f90 modified: Tests/Swarm/T_Junction_Square/User_Mod/Insert_Particles.f90 modified: Tests/Swarm/Three_Phase_Flow/User_Mod/Insert_Particles.f90 modified: Tests/Vof/Dam_Break_3d/User_Mod/End_Of_Time_Step.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/Beginning_Of_Correct_Velocity.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/End_Of_Compute_Momentum.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/End_Of_Compute_Pressure.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/End_Of_Correct_Velocity.f90 modified: Tests/Vof/Pie/User_Mod/End_Of_Time_Step.f90 modified: Tests/Vof/Rising_Bubble/User_Mod/End_Of_Time_Step.f90 modified: Tests/Vof/Spurious/User_Mod/End_Of_Time_Step.f90 modified: Tests/Vof/Stefan/User_Mod/End_Of_Compute_Energy.f90 modified: Tests/Vof/Stefan/User_Mod/End_Of_Compute_Pressure.f90 modified: Tests/Vof/Stefan/User_Mod/End_Of_Compute_Vof.f90 modified: Tests/Vof/Sucking/User_Mod/End_Of_Compute_Energy.f90 modified: Tests/Vof/Sucking/User_Mod/End_Of_Compute_Pressure.f90 modified: Tests/Vof/Sucking/User_Mod/End_Of_Compute_Vof.f90 modified: Tests/Vof/Vertical_Tube/User_Mod/End_Of_Time_Step.f90

On branch bojan_time_module modified: Time_Mod/Curr_Dt.f90 modified: Time_Mod/First_Dt.f90 modified: Time_Mod/Get_Time.f90 modified: Time_Mod/Increase_Time.f90 modified: Time_Mod/Last_Dt.f90 modified: Time_Mod/Needs_More_Steps.f90 modified: Time_Mod/Set_Curr_Dt.f90 modified: Time_Mod/Set_First_Dt.f90 modified: Time_Mod/Set_Last_Dt.f90 modified: Time_Mod/Set_Time.f90

Also introduced a new procedure in Grid_Mod, Load_And_Prepare_For_Processing to shorten the Main_Pro for a dozen lines or so. Date: Wed Apr 19 18:16:08 2023 +0200 On branch bojan_time_module modified: Documentation/Syntax/.vim/syntax/fortran.vim new file: Sources/Process/Iter_Mod.f90 new file: Sources/Process/Iter_Mod/Current.f90 new file: Sources/Process/Iter_Mod/Get_Max.f90 new file: Sources/Process/Iter_Mod/Get_Min.f90 new file: Sources/Process/Iter_Mod/Get_Tol.f90 new file: Sources/Process/Iter_Mod/Max_Fields_Residual.f90 new file: Sources/Process/Iter_Mod/Needs_More_Iterations.f90 new file: Sources/Process/Iter_Mod/Set_Max.f90 new file: Sources/Process/Iter_Mod/Set_Min.f90 new file: Sources/Process/Iter_Mod/Set_Tol.f90 modified: Sources/Process/Main_Pro.f90 modified: Sources/Process/Process_Mod/Compute_Energy.f90 modified: Sources/Process/Process_Mod/Compute_Momentum.f90 modified: Sources/Process/Process_Mod/Compute_Pressure.f90 modified: Sources/Process/Process_Mod/Compute_Scalar.f90 modified: Sources/Process/Process_Mod/Correct_Velocity.f90 modified: Sources/Process/Process_Mod/Piso_Algorithm.f90 modified: Sources/Process/Read_Controls_Mod.f90 modified: Sources/Process/Read_Controls_Mod/Boundary_Conditions.f90 new file: Sources/Process/Read_Controls_Mod/Iterations.f90 modified: Sources/Process/Read_Controls_Mod/Native_Solvers.f90 modified: Sources/Process/Read_Controls_Mod/Numerical_Schemes.f90 modified: Sources/Process/Read_Controls_Mod/Petsc_Solvers.f90 modified: Sources/Process/Read_Controls_Mod/Physical_Models.f90 modified: Sources/Process/Read_Controls_Mod/Physical_Properties.f90 modified: Sources/Process/Read_Controls_Mod/Solvers.f90 modified: Sources/Process/Turb_Mod.f90 modified: Sources/Process/Turb_Mod/Compute_F22.f90 modified: Sources/Process/Turb_Mod/Compute_Stress.f90 modified: Sources/Process/Turb_Mod/Compute_Variable.f90 modified: Sources/Process/Turb_Mod/Main_Turb.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Energy.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Momentum.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Pressure.f90 modified: Sources/Process/User_Mod/Beginning_Of_Compute_Scalar.f90 modified: Sources/Process/User_Mod/Beginning_Of_Correct_Velocity.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Energy.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Momentum.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Pressure.f90 modified: Sources/Process/User_Mod/End_Of_Compute_Scalar.f90 modified: Sources/Process/User_Mod/End_Of_Correct_Velocity.f90 modified: Sources/Process/makefile modified: Sources/Process/makefile_explicit_dependencies modified: Sources/Shared/Grid_Mod.f90 new file: Sources/Shared/Grid_Mod/Load_And_Prepare_For_Processing.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/Beginning_Of_Correct_Velocity.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/End_Of_Compute_Momentum.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/End_Of_Compute_Pressure.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/End_Of_Correct_Velocity.f90 modified: Tests/Vof/Stefan/User_Mod/End_Of_Compute_Energy.f90 modified: Tests/Vof/Stefan/User_Mod/End_Of_Compute_Pressure.f90 modified: Tests/Vof/Sucking/User_Mod/End_Of_Compute_Energy.f90 modified: Tests/Vof/Sucking/User_Mod/End_Of_Compute_Pressure.f90

On branch bojan_iter_module modified: Sources/Process/Main_Pro.f90

On branch bojan_iter_module modified: Documentation/Syntax/.vim/syntax/control.vim modified: Documentation/Syntax/.vim/syntax/fortran.vim

The case when residuals did not reached the tolerance level were not considered at all :-( On branch bojan_iter_module modified: Sources/Process/Iter_Mod/Needs_More_Iterations.f90

There was a lot of mess in calling control functions for linear solvers, both native and PETSc. Default solver for non-symmetric systems was 'cg' in some cases, and what is much more dramatic, 'cg' was by default coupled with 'asm' preconditioner which is not symmetric in parallel and and messes up the convergence (in parallel). To cite Pierre Jolivet, on of the more experienced PETSc gurus: "KSPCG requires a symmetric PC. By default, PCASMType is PC_ASM_RESTRICT, which yields a non-symmetric preconditioner. With a single process, this does not matter, but with more than one process, it does. If you switch to -pc_asm_type basic, KSPCG should converge. That being said, for Laplace equation, there are much faster alternatives than PCASM, e.g., PCGAMG." On branch bojan_iter_module modified: Sources/Process/Read_Controls_Mod/Petsc_Solvers.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Energy.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Momentum.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Potential.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Pressure.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Scalars.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Turbulence.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Vof.f90 modified: Sources/Shared/Control_Mod/Native/Solver_For_Wall_Distance.f90

Ideally, this should be a separate function. On branch bojan_iter_module modified: C_Petsc_Interface.c

On branch bojan_iter_module modified: Petsc_Mod/True/Solve_Petsc.f90

On branch bojan_iter_module modified: C_Petsc_Interface.c

On branch bojan_iter_module modified: test_build.sh

On branch bojan_iter_module modified: Read_Controls_Mod/Petsc_Solvers.f90

On branch bojan_iter_module modified: Tests/Vof/Rising_Bubble/readme

At the very end of the makefile, environment variables for PETSc libraries are included. If you have a compiler mismatch there, that is if you PETSc was compiled with different compiler from the one you are using to compile Process, errors will occur. On branch bojan_iter_module modified: Sources/Process/makefile

On branch bojan_iter_module modified: Main_Pro.f90 modified: Results_Mod/Save_Vtu_Swarm.f90 modified: Swarm_Mod.f90 modified: Swarm_Mod/Advance_Particles.f90 renamed: Swarm_Mod/Calculate_Mean.f90 -> Swarm_Mod/Calculate_Particles_Mean.f90 modified: Swarm_Mod/Exchange_Particles.f90 modified: Swarm_Mod/Grad_Modeled_Flow.f90 modified: Swarm_Mod/Move_Particle.f90 modified: Swarm_Mod/Particle_Time_Scale.f90 renamed: Swarm_Mod/Print_Statistics.f90 -> Swarm_Mod/Print_Swarm_Statistics.f90 modified: Swarm_Mod/Sgs_Discrete_Random_Walk.f90 modified: Swarm_Mod/Sgs_Fukagata.f90

On branch bojan_iter_module modified: Probe_1d_Cells_Nodes.f90 modified: Probe_1d_Nodes.f90

On branch bojan_iter_module modified: Syntax/.vim/syntax/fortran.vim

The trouble was that ANSYS software creates cell sections as one super-long line, but OF breaks the line in chunks. I never actually managed to come up with an algorithm which can deal with both, until this commit. Well at least I hope On branch bojan_iter_module modified: Convert/Convert_Mod/Load_Fluent.f90

I have no idea, as usual, what is being merged.

On branch bojan_iter_module modified: Shared/Grid_Mod/Print_Regions_List.f90

On branch bojan_iter_module modified: Process_Mod/Rhie_And_Chow.f90

On branch bojan_iter_module modified: Sources/Process/Results_Mod/Save_Vtu_Results.f90

That's good for safety. On branch bojan_iter_module modified: Process/Turb_Mod/Face_Cond_And_Stress.f90 modified: Process/Turb_Mod/Face_Diff_and_Stress.f90 modified: Process/Turb_Mod/Face_Stress.f90 modified: Process/Turb_Mod/Face_Vis.f90

Hamo noticed that buoyancy force gets too high near walls when wall functions are used. Therefore, in order to compute buoyancy near the walls, "fw" is used instead of plain "f" On branch bojan_iter_module modified: Process/Field_Mod/Utilities/Buoyancy_Forces.f90

On branch bojan_implements_giorgias_changes modified: Process/Front_Mod.f90 modified: Process/Front_Mod/Allocate_Front.f90 modified: Process/Front_Mod/Mark_Cells_And_Faces.f90 modified: Process/Front_Mod/Save_Debug_Front_Vtu.f90 modified: Process/Vof_Mod.f90 modified: Process/Vof_Mod/Utilities/Calculate_Grad_Matrix_With_Front.f90 modified: Process/Vof_Mod/Utilities/Grad_Component_No_Refresh_With_Front.f90 modified: Shared/Grid_Mod.f90 modified: Shared/Grid_Mod/Allocate_Faces.f90 modified: ../Tests/Vof/Stefan/User_Mod/End_Of_Compute_Energy.f90

On branch bojan_implements_giorgias_changes modified: Results_Mod/Time_To_Save_Results.f90

On branch bojan_implements_giorgias_changes modified: Iter_Mod/Max_Fields_Residual.f90

With this check in, only Stefan problem was tested. The changes are many, but most important are: - Replaced elems_at_face(:,:) with intersects_face(:); - Introduced fields t_0 and t_1, which hold gradients for phases 0 and 1 and also saves them in the results; - Replaced Vof % q_int with Vof % a12 and Vof % a21, so that saturation temperature can be inserted as a boundary condition, not a vague flux - Estimation of mass transfer is now cell-based, as it should be On branch bojan_implements_giorgias_changes modified: Sources/Process/Front_Mod.f90 modified: Sources/Process/Front_Mod/Allocate_Front.f90 modified: Sources/Process/Front_Mod/Mark_Cells_And_Faces.f90 modified: Sources/Process/Front_Mod/Save_Debug_Front_Vtu.f90 modified: Sources/Process/Process_Mod/Compute_Energy.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Results.f90 modified: Sources/Process/Vof_Mod.f90 modified: Sources/Process/Vof_Mod/Core/Allocate_Vof.f90 modified: Sources/Process/Vof_Mod/Core/Main_Vof.f90 modified: Sources/Process/Vof_Mod/Utilities/Calculate_Grad_Matrix_With_Front.f90 new file: Sources/Process/Vof_Mod/Utilities/Extrapolate_Normal_To_Front.f90 modified: Sources/Process/Vof_Mod/Utilities/Grad_Component_No_Refresh_With_Front.f90 modified: Sources/Process/Vof_Mod/Utilities/Mass_Transfer_Estimate.f90 modified: Tests/Vof/Stefan/User_Mod/End_Of_Compute_Energy.f90 modified: Tests/Vof/Stefan/User_Mod/Initialize_Variables.f90 new file: Tests/Vof/Stefan/scale_domain.py new file: Tests/Vof/Stefan/scale_front.py modified: Tests/Vof/Sucking/User_Mod/End_Of_Compute_Energy.f90

On branch bojan_implements_giorgias_changes modified: Documentation/Syntax/.vim/syntax/fortran.vim

Although it sounds like an insignificant detail, it allows one to insert commens in .scr files (mainly convert.scr and divide.scr) which makes them much more readable. I hope this will not ruin any of the scripts for testing which Egor wrote. He modifies those files from testing script. On branch bojan_implements_giorgias_changes modified: Sources/Convert/Convert_Mod/Calculate_Geometry.f90 modified: Sources/Convert/Main_Con.f90 modified: Sources/Divide/Main_Div.f90 modified: Sources/Shared/File_Mod.f90 new file: Sources/Shared/File_Mod/Single_Int_From_Keyboard.f90 new file: Sources/Shared/File_Mod/Single_Word_From_Keyboard.f90 modified: Tests/Les/Matrix_Of_Cubes/convert.scr new file: Tests/Vof/Rising_Bubble/convert.scr modified: Tests/Vof/Rising_Bubble/divide.scr

On branch bojan_tuning_petsc_again modified: Documentation/Syntax/.vim/syntax/control.vim modified: Documentation/Syntax/.vim/syntax/fortran.vim

On branch bojan_tuning_petsc_again new file: Tests/Laminar/Backstep/Orthogonal/Solvers_Scaling/profile.dat

1. Changed a couple of variable names in Var_Mod 2. Passes variable instead of array to Solver % Run 3. Reduced the number of parameters passed to Solver % Run On branch bojan_tuning_petsc_again modified: Process/Field_Mod/Utilities/Compute_Wall_Distance.f90 modified: Process/Field_Mod/Utilities/Potential_Initialization.f90 modified: Process/Native_Mod/Prec_Form.f90 modified: Process/Native_Mod/Prec_Solve.f90 modified: Process/Process_Mod/Compute_Energy.f90 modified: Process/Process_Mod/Compute_Momentum.f90 modified: Process/Process_Mod/Compute_Pressure.f90 modified: Process/Process_Mod/Compute_Scalar.f90 modified: Process/Process_Mod/Piso_Algorithm.f90 modified: Process/Read_Controls_Mod/Native_Solvers.f90 modified: Process/Solver_Mod.f90 modified: Process/Solver_Mod/Run.f90 modified: Process/Turb_Mod/Compute_F22.f90 modified: Process/Turb_Mod/Compute_Stress.f90 modified: Process/Turb_Mod/Compute_Variable.f90 modified: Process/Var_Mod.f90 modified: Process/Vof_Mod/Core/Solve_System.f90 modified: Process/makefile

Which is self-descriptive, for blendig system matrices with upwind contribution. It is a technique which makes much more sense to RANS than to other methods. On branch bojan_tuning_petsc_again modified: Documentation/Syntax/.vim/syntax/control.vim modified: Documentation/all_control_keywords modified: Sources/Process/Field_Mod.f90 modified: Sources/Process/Numerics_Mod/Advection_Term.f90 modified: Sources/Process/Process_Mod/Compute_Energy.f90 modified: Sources/Process/Process_Mod/Compute_Momentum.f90 modified: Sources/Process/Process_Mod/Compute_Scalar.f90 modified: Sources/Process/Read_Controls_Mod/Numerical_Schemes.f90 modified: Sources/Process/Turb_Mod/Compute_Stress.f90 modified: Sources/Process/Turb_Mod/Compute_Variable.f90 modified: Sources/Process/makefile_explicit_dependencies modified: Sources/Shared/Control_Mod.f90 new file: Sources/Shared/Control_Mod/Numerics/Blend_System_Matrices.f90 modified: Tests/Laminar/Backstep/Orthogonal/Solvers_Scaling/control

On branch bojan_tuning_petsc_again One of the most important changes I did in this endeavour was to introuce Petsc_Type inside a variable, so that each variable can hold its own copy of PETSc matrices, vectors and solvers. (By doing so, I was hoping to improve the performance of the code by avoiding copying the matrices and updating the preconditioner, but it lead to very modest improvements.) Changes done: 1. modified: Var_Mod.f90 renamed: Var_Mod/Allocate_New_Only.f90 -> Var_Mod/Create_New_Only.f90 renamed: Var_Mod/Allocate_Solution.f90 -> Var_Mod/Create_Solution.f90 new file: Var_Mod/Destroy_New_Only.f90 new file: Var_Mod/Destroy_Solution.f90 I introduced Petsc_Type inside the variable, but also added a few member functions (to destroy the object, and renamed some. 2. modified: Solver_Mod.f90 modified: Solver_Mod/Create_Solver.f90 modified: Solver_Mod/End.f90 modified: Solver_Mod/Remove_Singular.f90 modified: Solver_Mod/Run.f90 modified: Solver_Mod/Set_Singular.f90 modified: Petsc_Mod.f90 modified: Petsc_Mod/Fake/Create_Petsc.f90 new file: Petsc_Mod/Fake/Destroy_Petsc.f90 modified: Petsc_Mod/Fake/Solve_Petsc.f90 modified: Petsc_Mod/True/Create_Petsc.f90 new file: Petsc_Mod/True/Destroy_Petsc.f90 modified: Petsc_Mod/True/Solve_Petsc.f90 Since the Petsc_Type changed its position, it reflected the way Solver_Mod is written. The definition of Petsc_Type is gone and syntax to call solvers changed too. Changes to Petsc_Mod were necessary too. 3. modified: Field_Mod.f90 renamed: Field_Mod/Core/Allocate_Field.f90 -> Field_Mod/Core/Create_Field.f90 modified: Field_Mod/Utilities/Compute_Wall_Distance.f90 modified: Field_Mod/Utilities/Potential_Initialization.f90 Field_Mod, since it holds a Var_Type, was impacted by the changes in Var_Mod 4. modified: Process_Mod/Compute_Momentum.f90 modified: Process_Mod/Compute_Pressure.f90 modified: Process_Mod/Compute_Scalar.f90 modified: Process_Mod/Compute_Energy.f90 modified: Turb_Mod/Compute_Variable.f90 modified: Numerics_Mod/Advection_Term.f90 In these files, only the position of the logical blend_matrix was moved from the Field_Mod to the Var_mod. 5. modified: Main_Pro.f90 modified: Swarm_Mod.f90 renamed: Swarm_Mod/Allocate_Swarm.f90 -> Swarm_Mod/Create_Swarm.f90 modified: Turb_Mod.f90 modified: Turb_Mod/Compute_Stress.f90 modified: Turb_Mod/Compute_Variable.f90 renamed: Turb_Mod/Allocate_Turb.f90 -> Turb_Mod/Create_Turb.f90 modified: Vof_Mod.f90 renamed: Vof_Mod/Core/Allocate_Vof.f90 -> Vof_Mod/Core/Create_Vof.f90 The changes following the change in Var_Mod, but also, for the sake of unifor- mity, I renamed all Allocate_ functions to Create_. 6. modified: Native_Mod.f90 modified: Native_Mod/Create_Native.f90 Here I only added an assertion. 7. modified: C_Petsc_Interface.c Added a lot of new interface functions to PETSc 8. modified: Matrix_Mod.f90 modified: Matrix_Mod/Create_Matrix.f90 Moved array "glo" from Petsc_Mod to Matrix_mod. 9. modified: Read_Controls_Mod/Numerical_Schemes.f90 modified: Read_Controls_Mod/Petsc_Solvers.f90 modified: Laminar/Backstep/Orthogonal/Solvers_Scaling/control modified: Les/Matrix_Of_Cubes/control modified: Manual/Matrix_Of_Cubes/Comparison/control modified: Manual/Matrix_Of_Cubes/control modified: Vof/Rising_Bubble/control modified: Documentation/Syntax/.vim/syntax/control.vim

1. The good: found out why I couldn't get performance from PETSc, it was because of a call to MatrixAssemblyBegin 2. The bad: couldn't think of a better way to control whether the profiling info should be generated than a global variable. 3. The ugly: there is no way to send profiling info to a file. On branch bojan_tuning_petsc_again modified: Sources/Process/Petsc_Mod.f90 modified: Sources/Process/Petsc_Mod/True/Create_Petsc.f90 modified: Sources/Process/Petsc_Mod/True/Solve_Petsc.f90 modified: Sources/Process/Solver_Mod/End.f90

On branch bojan_tuning_petsc_again modified: Sources/Process/C_Petsc_Interface.c

On branch bojan_tuning_petsc_again modified: Petsc_Mod/True/Create_Petsc.f90 modified: Petsc_Mod/True/Solve_Petsc.f90

I don't understand exactly why, it just strated out of a sudden. Maybe, but just maybe, it has to do with the fact that I recompiled PETSc with option --with-log=1, but even with that it didn't start immediatelly. modified: Documentation/Syntax/.vim/syntax/control.vim modified: Sources/Process/Petsc_Mod.f90 modified: Sources/Process/Petsc_Mod/True/Create_Petsc.f90 modified: Sources/Process/Read_Controls_Mod/Petsc_Solvers.f90 modified: Sources/Process/Var_Mod.f90 modified: Sources/Process/Var_Mod/Create_Solution.f90 modified: Tests/Laminar/Backstep/Orthogonal/Solvers_Scaling/control modified: Tests/Les/Matrix_Of_Cubes/control modified: Tests/Manual/Matrix_Of_Cubes/Comparison/control modified: Tests/Manual/Matrix_Of_Cubes/control modified: Tests/Vof/Rising_Bubble/control

On branch bojan_tuning_petsc_again modified: Petsc_Mod/True/Create_Petsc.f90

On branch bojan_tuning_petsc_again modified: Documentation/Syntax/.vim/syntax/fortran.vim

On branch bojan_tuning_petsc_again modified: Tests/Les/Matrix_Of_Cubes/control

At this point, momentum equations share one matrix and all Reynolds stresses too. On branch bojan_tuning_petsc_again modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Process/Field_Mod/Core/Create_Field.f90 modified: Sources/Process/Petsc_Mod.f90 modified: Sources/Process/Petsc_Mod/Fake/Create_Petsc.f90 modified: Sources/Process/Petsc_Mod/Fake/Solve_Petsc.f90 modified: Sources/Process/Petsc_Mod/True/Create_Petsc.f90 modified: Sources/Process/Petsc_Mod/True/Solve_Petsc.f90 modified: Sources/Process/Read_Controls_Mod/Petsc_Solvers.f90 modified: Sources/Process/Turb_Mod/Create_Turb.f90 modified: Sources/Process/Var_Mod.f90 modified: Sources/Process/Var_Mod/Create_Solution.f90 modified: Sources/Process/makefile modified: Sources/Shared/Const_Mod.f90 modified: Sources/Shared/Control_Mod/Basic_Functions/Read_Strings_On.f90

It was a reasonable thing to do, no need to drag a whole variable around if it is used only once. On branch bojan_tuning_petsc_again modified: Process/Field_Mod.f90 modified: Process/Field_Mod/Core/Create_Field.f90 modified: Process/Field_Mod/Utilities/Compute_Wall_Distance.f90 modified: Process/Field_Mod/Utilities/Potential_Initialization.f90 modified: Process/Results_Mod/Save_Vtu_Results.f90

On branch bojan_tuning_petsc_again modified: Read_Controls_Mod/Petsc_Solvers.f90

On branch bojan_tuning_petsc_again modified: ../Shared/Probe_1d_Cells.f90 modified: ../Shared/Probe_1d_Nodes.f90 modified: ../Shared/Probe_2d.f90

On branch bojan_tuning_petsc_again deleted: Shared/Probe_1d_Cells_Nodes.f90

On branch bojan_tuning_petsc_again modified: Documentation/Syntax/.vim/syntax/fortran.vim

With this commit I am submitting the changes needed to speed up saving of .cfn, .dim and .vtu files - a lot - almost twenty times. The issue was in buffering. I was assuming Fortran (or OS for that matter) would somehow do the buffering in the best way possible. I was wrong - it doesn't even come close to the case when I perform buffering myself. So ... this is what this commit is all about: changed files are buffered! On branch bojan_sped_up_saving_big_time modified: Sources/Process/Results_Mod/Save_Vtu_Results.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Scalar_Int.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Scalar_Real.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Tensor_6_Real.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Vector_Real.f90 modified: Sources/Shared/Grid_Mod/Save_Cfn.f90 modified: Sources/Shared/Grid_Mod/Save_Dim.f90 modified: Sources/Shared/Grid_Mod/Save_Vtu_Cells.f90 modified: Sources/Shared/Grid_Mod/Save_Vtu_Faces.f90

I managed to achieve it with "windowed buffering", that is reading the input file in big chunks and analyzing one by one, but making sure that there is always a window from the previous buffer because it may contain a portion of the pattern you are looking for. As a part of it, a new module was introduced: Pattern_Mod Good stuff! On branch bojan_sped_up_saving_big_time modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Convert/Convert_Mod.f90 modified: Sources/Convert/Convert_Mod/Load_Gmsh.f90 new file: Sources/Convert/Pattern_Mod.f90 new file: Sources/Convert/Pattern_Mod/Create_Pattern.f90 new file: Sources/Convert/Pattern_Mod/Match_Pattern.f90 modified: Sources/Convert/makefile

It would probably confuse the preprocessor On branch bojan_sped_up_saving_big_time modified: Sources/Convert/Convert_Mod/Load_Gmsh.f90 modified: Sources/Convert/makefile_explicit_dependencies modified: Sources/Divide/makefile_explicit_dependencies modified: Sources/Generate/makefile_explicit_dependencies modified: Sources/Process/makefile_explicit_dependencies

On branch bojan_sped_up_saving_big_time modified: City_Benchmark/1.city.geo modified: City_Benchmark/1_building.geo modified: City_Benchmark/3.city.geo modified: City_Benchmark/3_buildings.geo modified: City_Benchmark/convert.1.scr modified: City_Benchmark/convert.3.scr modified: City_Benchmark/ground.geo

On branch bojan_sped_up_saving_big_time modified: Convert/Convert_Mod/Insert_Buildings.f90

On branch bojan_sped_up_saving_big_time modified: Convert/Convert_Mod/Load_Gmsh.f90

On branch bojan_sped_up_saving_big_time modified: Process/Petsc_Mod/Fake/Solve_Petsc.f90

On branch bojan_sped_up_saving_big_time modified: Process/Solver_Mod/End.f90

On branch bojan_sped_up_saving_big_time modified: Process/Read_Controls_Mod/Boundary_Conditions.f90

... no matter if you wanted it or not On branch bojan_sped_up_saving_big_time modified: Process/Results_Mod/Main_Results.f90

Maybe one building should follow suit. On branch bojan_sped_up_saving_big_time modified: 3.city.geo modified: 3_buildings.geo

On branch bojan_sped_up_saving_big_time new file: City_Benchmark/Generate_Inflow_Sub_Case/User_Mod/Save_Results.f90 new file: City_Benchmark/Generate_Inflow_Sub_Case/chan.dom new file: City_Benchmark/Generate_Inflow_Sub_Case/control new file: City_Benchmark/Generate_Inflow_Sub_Case/divide.scr new file: City_Benchmark/Generate_Inflow_Sub_Case/generate.scr new file: City_Benchmark/Generate_Inflow_Sub_Case/inlet_profile.dat

On branch bojan_sped_up_saving_big_time new file: City_Benchmark/control new file: City_Benchmark/inlet_profile.dat

On branch bojan_sped_up_saving_big_time modified: Results_Mod/Save_Vtu_Results.f90

On branch bojan_sped_up_saving_big_time modified: Process/Read_Controls_Mod/Boundary_Conditions.f90 modified: Process/Read_Controls_Mod/Native_Solvers.f90 modified: Process/Read_Controls_Mod/Numerical_Schemes.f90 modified: Process/Read_Controls_Mod/Petsc_Solvers.f90 modified: Process/Read_Controls_Mod/Physical_Models.f90 modified: Process/Read_Controls_Mod/Physical_Properties.f90 modified: Process/Turb_Mod/Create_Turb.f90 modified: Process/Vof_Mod/Core/Create_Vof.f90

On branch bojan_sped_up_saving_big_time modified: Results_Mod/Save_Vtu_Results.f90

On branch bojan_sped_up_saving_big_time modified: Documentation/Syntax/.vim/syntax/fortran.vim

On branch bojan_sped_up_saving_big_time modified: Shared/File_Mod.f90 modified: Shared/Grid_Mod.f90 modified: Shared/Grid_Mod/Load_Cfn.f90 modified: Shared/Grid_Mod/Load_Dim.f90

On branch bojan_sped_up_saving_big_time modified: Shared/Profiler_Mod/Statistics.f90

On branch bojan_sped_up_saving_big_time modified: Convert/Convert_Mod/Insert_Buildings.f90 modified: Convert/Main_Con.f90

On branch bojan_sped_up_saving_big_time modified: test_build.sh

On branch bojan_sped_up_saving_big_time new file: Shared/File_Mod/Buffered_Read_Int_Array.f90 new file: Shared/File_Mod/Buffered_Read_Real_Array.f90

…lNov/T-Flows into bojan_sped_up_saving_big_time

On branch bojan_sped_up_saving_big_time modified: Sources/Shared/Control_Mod/Basic_Functions/Open_Root_File.f90

On branch bojan_sped_up_saving_big_time new file: Generate_Inflow_Sub_Case/chan-res-ts020000.dat new file: inlet_profile.dat

On branch bojan_sped_up_saving_big_time modified: Read_Controls_Mod/Boundary_Conditions.f90

On branch bojan_sped_up_saving_big_time modified: Field_Mod/Utilities/Potential_Initialization.f90 modified: Main_Pro.f90

On branch bojan_sped_up_saving_big_time modified: Field_Mod/Utilities/Potential_Initialization.f90

On branch bojan_sped_up_saving_big_time modified: User_Mod/Save_Results.f90

On branch bojan_sped_up_saving_big_time modified: Generate_Inflow_Sub_Case/chan.dom

On branch bojan_sped_up_saving_big_time modified: convert.scr

On branch bojan_sped_up_saving_big_time modified: Convert/Convert_Mod/Calculate_Geometry.f90

On branch bojan_sped_up_saving_big_time modified: Sources/Convert/Convert_Mod/Load_Gmsh.f90 modified: Sources/Shared/Grid_Mod/Load_Dim.f90

and also removed the oldie Probe_2d, which was not even used any more. Actually, it was never used at all. Stillborn. On branch bojan_sped_up_saving_big_time modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Convert/Main_Con.f90 modified: Sources/Generate/Main_Gen.f90 modified: Sources/Generate/makefile modified: Sources/Shared/Grid_Mod.f90 new file: Sources/Shared/Grid_Mod/Search_Coordinate_Clusters.f90 deleted: Sources/Shared/Probe_2d.f90 deleted: Sources/Shared/Probe_2d.h90

On branch bojan_sped_up_saving_big_time modified: Tests/Hybrid_Les_Rans/City_Benchmark/control

On branch bojan_sped_up_saving_big_time modified: Convert/makefile modified: Divide/makefile modified: Generate/makefile modified: Process/makefile

On branch bojan_sped_up_saving_big_time modified: Process/makefile

On branch bojan_sped_up_saving_big_time deleted: Functionality/Gradients/convert.scr new file: Manual/Lid_Driven_Cavity/Hexa/convert.scr

On branch bojan_sped_up_saving_big_time modified: Functionality/Communication/convert_a.scr modified: Functionality/Communication/convert_b.scr modified: Functionality/Gradients/convert_cylinder_tetras_dual.scr modified: Functionality/Meshes/Gmsh/Pipe/convert.scr modified: Laminar/Cavity/Lid_Driven/Tetrahedral/Re_0400/convert.1.scr modified: Laminar/Cavity/Lid_Driven/Tetrahedral/Re_0400/convert.2.scr modified: Laminar/Membrane/Spiral_Poly/convert_cold_dual.scr modified: Laminar/Membrane/Spiral_Poly/convert_hot_dual.scr

On branch bojan_sped_up_saving_big_time modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-dual.scr modified: Laminar/Backstep/Polyhedral/convert.scr modified: Laminar/Cavity/Thermally_Driven/Skewed/convert.scr modified: Laminar/Channel/convert-dual.scr modified: Manual/Lid_Driven_Cavity/Dual/convert.scr modified: Manual/Parallel/convert.scr modified: Swarm/Rod_Bundle_Polyhedral/convert.scr

On branch bojan_sped_up_saving_big_time modified: Sources/Convert/makefile modified: Sources/Divide/makefile modified: Sources/Generate/makefile modified: Sources/Process/makefile

It asks for uniformity enforcement only for dual grids. For the others, it really doesn't make senste, it is reduntant. On branch bojan_sped_up_saving_big_time modified: Sources/Convert/Convert_Mod/Calculate_Geometry.f90 modified: Sources/Convert/Main_Con.f90 modified: Sources/Generate/Main_Gen.f90 modified: Sources/Shared/Grid_Mod/Search_Coordinate_Clusters.f90

The logic I had before was only working for files which are bigger than buffers. It wasn't easy to fix, but I think I have a working solution now. On branch bojan_sped_up_saving_big_time modified: Convert_Mod/Load_Gmsh.f90

On branch bojan_sped_up_saving_big_time modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-dual.scr modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-per-x.scr modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-per-y.scr modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-per-z.scr modified: Functionality/Meshes/Gmsh/Cube/One_Boundary_Condition/convert-one.scr modified: Functionality/Meshes/Gmsh/Cube/Tetrahedral_Periodic/convert-tet.scr modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/convert_ra_10e5 modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/convert_ra_10e6 modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/convert_ra_10e7 modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/convert_ra_10e8 modified: Manual/Conjugate/convert.1.scr modified: Manual/Conjugate/convert.2.scr modified: Manual/Conjugate/convert.3.scr modified: Manual/Impinging_Jet_2d_Distant_Re_23000/convert.scr modified: Manual/Inflows/convert.cylinder.scr modified: Manual/Inflows/convert.precursor.scr modified: Manual/Thermally_Driven/Direct/convert.scr modified: Manual/Thermally_Driven/Varible/convert.scr modified: Swarm/Bend_90_Degrees/convert.1.scr modified: Swarm/Bend_90_Degrees/convert.2.scr modified: Swarm/T_Junction_Circular/convert.scr modified: Vof/Pie/convert.scr

On branch bojan_sped_up_saving_big_time modified: Functionality/Gradients/convert_cube.scr modified: Functionality/Gradients/convert_cylinder_hexas.scr modified: Functionality/Gradients/convert_cylinder_prisms.scr modified: Functionality/Gradients/convert_cylinder_tetras.scr modified: Functionality/Meshes/Ansys/Elbow_Ascii/convert-ascii.scr modified: Functionality/Meshes/Ansys/Elbow_Binary/convert-binary.scr modified: Functionality/Meshes/Gmsh/Arrow/convert.scr modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-dual.scr modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-per-x.scr modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-per-y.scr modified: Functionality/Meshes/Gmsh/Cube/Hexahedral_Periodic/convert-per-z.scr modified: Functionality/Meshes/Gmsh/Cube/One_Boundary_Condition/convert-one.scr modified: Functionality/Meshes/Gmsh/Cube/Tetrahedral_Periodic/convert-tet.scr modified: Functionality/Meshes/Gmsh/Cylinder/convert.scr modified: Functionality/Meshes/Gmsh/L_Shape/convert.scr modified: Functionality/Meshes/Gmsh/Wedge/convert.scr modified: Functionality/Meshes/Gmsh/X_Junction/convert.scr modified: Hybrid_Les_Rans/Cylinder/convert.scr modified: Laminar/Backstep/Orthogonal_With_Eddies/convert.scr modified: Laminar/Cavity/Lid_Driven/Skewed/convert.scr modified: Laminar/Cavity/Thermally_Driven/Conjugate/convert.1.scr modified: Laminar/Cavity/Thermally_Driven/Conjugate/convert.2.scr modified: Laminar/Cavity/Thermally_Driven/Conjugate/convert.3.scr modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/convert_ra_10e5 modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/convert_ra_10e6 modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/convert_ra_10e7 modified: Laminar/Cavity/Thermally_Driven/Direct/Variable_Properties_Air/convert_ra_10e8 modified: Laminar/Convective_Outflow/convert.scr modified: Laminar/Cylinder/Horizontal/convert.scr modified: Laminar/Flat_Plate/convert.scr modified: Laminar/Heat_Exchanger/2_Domains/convert_lower_dom.scr modified: Laminar/Heat_Exchanger/2_Domains/convert_upper_dom.scr modified: Laminar/Heat_Exchanger/3_Domains/convert_lower_dom.scr modified: Laminar/Heat_Exchanger/3_Domains/convert_membrane.scr modified: Laminar/Heat_Exchanger/3_Domains/convert_upper_dom.scr modified: Laminar/Membrane/2_Domains/convert_lower_dom.scr modified: Laminar/Membrane/2_Domains/convert_upper_dom.scr modified: Laminar/Membrane/Spacers/Concave/convert.scr modified: Laminar/Membrane/Spacers/Parallelogram/convert.scr modified: Laminar/Membrane/Spacers/Teardrop/convert.scr modified: Laminar/Membrane/Spiral/convert_cold.scr modified: Laminar/Membrane/Spiral/convert_hot.scr modified: Laminar/Module/convert.scr modified: Les/Barc/convert.scr modified: Les/Forrest/convert.scr modified: Les/Forrest/convert_plant_trees.scr modified: Les/Pipe_Re_Tau_180/convert.scr modified: Manual/Conjugate/convert.1.scr modified: Manual/Conjugate/convert.2.scr modified: Manual/Conjugate/convert.3.scr modified: Manual/Impinging_Jet_2d_Distant_Re_23000/convert.scr modified: Manual/Inflows/convert.cylinder.scr modified: Manual/Inflows/convert.precursor.scr modified: Manual/Matrix_Of_Cubes/convert.scr modified: Manual/Rising_Bubble/convert.scr modified: Manual/Thermally_Driven/Direct/convert.scr modified: Manual/Thermally_Driven/Varible/convert.scr modified: Rans/Fuel_Bundle/convert.scr modified: Rans/Impinging_Jet_2d_Distant_Re_23000/convert.scr modified: Rans/Membrane/convert.1.scr modified: Rans/Membrane/convert.2.scr modified: Rans/Membrane/convert.3.scr modified: Rans/Pipe_Re_Tau_550/convert.scr modified: Swarm/Bend_90_Degrees/convert.1.scr modified: Swarm/Bend_90_Degrees/convert.2.scr modified: Swarm/Cylinders_Periodic/convert.scr modified: Swarm/Rod_Bundle_Hexagonal/convert.scr modified: Swarm/T_Junction_Circular/convert.scr modified: Vof/Dam_Break_3d/convert.scr modified: Vof/Eight_Bubbles/convert_dual.scr modified: Vof/Eight_Bubbles/convert_hex.scr modified: Vof/Fuel_Bundle/convert.scr modified: Vof/Pie/D_5.9/Case_03_Mo_1.7e+0/convert.scr modified: Vof/Pie/D_5.9/Case_07_Mo_2.9e-2/convert.scr modified: Vof/Pie/D_5.9/Case_11_Mo_1.3e-3/convert.scr modified: Vof/Pie/D_5.9/Case_15_Mo_4.6e-6/convert.scr modified: Vof/Pie/convert.scr modified: Vof/Vertical_Tube/convert.scr

On branch bojan_sped_up_saving_big_time modified: Sources/Shared/Grid_Mod/Search_Coordinate_Clusters.f90

…lNov/T-Flows into bojan_sped_up_saving_big_time

I was sure I needed it for BiCG or some preconditioner. Your branch is up to date with 'origin/bojan_sped_up_saving_big_time'. modified: Process/Matrix_Mod.f90 modified: Process/Matrix_Mod/Create_Matrix.f90

On branch bojan_sped_up_saving_big_time modified: Shared/Grid_Mod.f90 modified: Shared/Grid_Mod/Allocate_Cells.f90 modified: Shared/Grid_Mod/Allocate_Faces.f90 modified: Shared/Grid_Mod/Allocate_Nodes.f90

On branch bojan_sped_up_saving_big_time modified: Solver_Mod/Set_Singular.f90

On branch bojan_sped_up_saving_big_time modified: Sources/Process/C_Petsc_Interface.c modified: Documentation/Syntax/.vim/syntax/fortran.vim

On branch bojan_sped_up_saving_big_time modified: syntax/fortran.vim

On branch bojan_sped_up_saving_big_time new file: ftdetect/include.vim new file: ftdetect/readme new file: syntax/readme

On branch bojan_sped_up_saving_big_time modified: Shared/Browse.h90 modified: Shared/Grid_Mod/Determine_Regions_Ranges.f90

- Generate, Convert and Divide should not accept MPI option - Process should accept DIR_CASE option On branch bojan_sped_up_saving_big_time modified: Convert/makefile modified: Divide/makefile modified: Generate/makefile modified: Process/makefile

It just makes more sense and is clearer. I think I also introduced one more macro with this commit and it is called: Cell_In_This_Proc. I think, but I am not sure. modified: Sources/Divide/Divide_Mod/Save_Subdomains.f90 modified: Sources/Process/Field_Mod/Gradients/Calculate_Grad_Matrix.f90 modified: Sources/Process/Field_Mod/Gradients/Grad_Component.f90 modified: Sources/Process/Field_Mod/Gradients/Grad_Component_No_Refresh.f90 modified: Sources/Process/Field_Mod/Gradients/Grad_Gauss.f90 modified: Sources/Process/Field_Mod/Gradients/Grad_Gauss_Pressure.f90 modified: Sources/Process/Field_Mod/Gradients/Grad_Three_Components_No_Refresh.f90 modified: Sources/Process/Field_Mod/Interpolations/Interpolate_To_Faces_Harmonic.f90 modified: Sources/Process/Field_Mod/Interpolations/Interpolate_To_Faces_Linear.f90 modified: Sources/Process/Field_Mod/Utilities/Calculate_Bulk_Fluxes.f90 modified: Sources/Process/Numerics_Mod/Advection_Term.f90 modified: Sources/Process/Process_Mod/Compute_Momentum_Explicit.f90 modified: Sources/Process/Process_Mod/Rhie_And_Chow.f90 modified: Sources/Process/Vof_Mod/Core/Correct_Beta.f90 modified: Sources/Process/Vof_Mod/Core/Discretize.f90 modified: Sources/Process/Vof_Mod/Core/Max_Courant_Number.f90 modified: Sources/Process/Vof_Mod/Core/Predict_Beta.f90 modified: Sources/Process/Vof_Mod/Curvature/Smooth_Curvature.f90 modified: Sources/Process/Vof_Mod/Curvature/Smooth_Scalar.f90 modified: Sources/Process/Vof_Mod/Utilities/Mass_Transfer_Estimate.f90 modified: Sources/Shared/Browse.h90 modified: Sources/Shared/Grid_Mod/Determine_Regions_Ranges.f90 modified: Sources/Shared/Grid_Mod/Determine_Threads.f90 modified: Tests/Functionality/Omp/User_Mod/Beginning_Of_Simulation.f90

Cute, but hardly useful. Just cute. On branch bojan_sped_up_saving_big_time modified: test_build.sh

On branch bojan_sped_up_saving_big_time modified: Sources/Process/Field_Mod/Utilities/Calculate_Bulk_Fluxes.f90 modified: Sources/Process/Petsc_Mod.f90 modified: Sources/Process/Petsc_Mod/True/Create_Petsc.f90 modified: Sources/Process/Process_Mod/Update_Boundary_Values.f90 modified: Sources/Process/Results_Mod/Save_Vtu_Results.f90 modified: Sources/Process/Surf_Mod.f90 modified: Sources/Process/Surf_Mod/Distribute_Cell_Coords.f90 modified: Sources/Process/Surf_Mod/Distribute_Smooth.f90 modified: Sources/Process/Swarm_Mod.f90 modified: Sources/Process/Swarm_Mod/Print_Swarm_Statistics.f90 modified: Sources/Shared/Grid_Mod/Determine_Regions_Ranges.f90 modified: Sources/Shared/Grid_Mod/Form_Cells_Comm.f90 modified: Sources/Shared/Grid_Mod/Form_Maps_For_Backup.f90 modified: Sources/Shared/Grid_Mod/Print_Grid_Statistics.f90 modified: Tests/Laminar/Cavity/Thermally_Driven/Conjugate/User_Mod/End_Of_Time_Step.f90 modified: Tests/Laminar/Membrane/2_Domains/User_Mod/Beginning_Of_Iteration.f90 modified: Tests/Manual/Conjugate/User_Mod/End_Of_Time_Step.f90

... and Divide do not accept MPI as an option, and don't send this option accordingly. On branch bojan_sped_up_saving_big_time modified: Tests/test_build.sh

+ Cell_In_This_Proc. On branch bojan_sped_up_saving_big_time modified: Documentation/Syntax/.vim/syntax/fortran.vim

On branch bojan_sped_up_saving_big_time modified: Sources/Shared/Comm_Mod/Shared/Parallel_Run.f90

Solve_Petsc to Read_Control_Solvers. On branch bojan_sped_up_saving_big_time modified: Sources/Process/Petsc_Mod/Fake/Solve_Petsc.f90 modified: Sources/Process/Read_Controls_Mod/Solvers.f90

On branch bojan_sped_up_saving_big_time modified: User_Mod/Insert_Particles.f90

Instead of: Sub-00001 Sub-00002 Sub-00003 Sub-00004 It is now: Sub/00001 Sub/00002 Sub/00003 Sub/00004 So that the case directory doesn't get too cluttered with names. Only one sub-directory is visible and is called simply "Sub" On branch bojan_sped_up_saving_big_time modified: Shared/File_Mod/Set_Name.f90

On branch bojan_sped_up_saving_big_time modified: Field_Mod/Utilities/Compute_Wall_Distance.f90 modified: Field_Mod/Utilities/Potential_Initialization.f90

On branch bojan_sped_up_saving_big_time modified: Process/Matrix_Mod.f90

One has to include this specific options - crazy. (I don't know what Nvidia does, but I also didn't use it in quite a while.) On branch bojan_sped_up_saving_big_time modified: Convert/makefile modified: Divide/makefile modified: Generate/makefile modified: Process/makefile

On branch bojan_sped_up_saving_big_time new file: Process/Matrix_Mod/Unused/Create_Matrix.f90 new file: Process/Matrix_Mod/Unused/readme

On branch bojan_sped_up_saving_big_time modified: Tests/Laminar/Backstep/Nonorthogonal/generate.scr modified: Tests/Laminar/Backstep/Orthogonal/generate.scr

On branch bojan_sped_up_saving_big_time modified: ../../Tests/Manual/Parallel/convert.scr

function with Intel compiler. The solution is not too elegant as it involves some conditional statements in pre-processor, but at least it works now. On branch bojan_sped_up_saving_big_time modified: Tests/Laminar/Flat_Plate/User_Mod/Save_Results.f90 modified: Tests/Laminar/Membrane/2_Domains/User_Mod/Beginning_Of_Iteration.f90 modified: Tests/Laminar/Membrane/2_Domains/User_Mod/Interface_Exchange.f90 modified: Tests/Laminar/Membrane/2_Domains/User_Mod/Pv_Sat_Salt.f90 modified: Tests/Manual/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Results.f90 modified: Tests/Rans/Backstep_Re_28000/User_Mod/Save_Results.f90 modified: Tests/Rans/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Results.f90 modified: Tests/Vof/Dam_Break_3d/User_Mod/Initialize_Variables.f90 modified: Tests/Vof/Mencinger_And_Zun/User_Mod/Initialize_Variables.f90 modified: Tests/Vof/Stefan/User_Mod/Initialize_Variables.f90

This contains modifications to User_Mod functions to be able to compile them with Intel Fortran compiler.

On branch bojan_sped_up_saving_big_time modified: Tests/Manual/Conjugate/User_Mod/End_Of_Time_Step.f90 modified: Tests/Manual/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Impinging_Jet_Nu.f90 modified: Tests/Manual/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Impinging_Jet_Profiles.f90 modified: Tests/Manual/Impinging_Jet_2d_Distant_Re_23000/User_Mod/Save_Results.f90 modified: readme.md

On branch bojan_sped_up_saving_big_time modified: readme.md

On branch bojan_sped_up_saving_big_time new file: Documentation/Manual/Figures/bubble_sphere.png deleted: Tests/Manual/Rising_Bubble/User_Mod/Initialize_Variables.f90 modified: Tests/Manual/Rising_Bubble/control deleted: Tests/Manual/Rising_Bubble/ellipsoid_parameters.ini new file: Tests/Manual/Rising_Bubble/sphere.py new file: Tests/Manual/Rising_Bubble/sphere.stl modified: readme.md

Reduced the size of sphere figure a little bit

On branch bojan_sped_up_saving_big_time modified: User_Mod/Beginning_Of_Compute_Vof.f90 modified: User_Mod/Beginning_Of_Time_Step.f90 modified: User_Mod/Calculate_Mean.f90 modified: User_Mod/End_Of_Compute_Scalar.f90 modified: User_Mod/End_Of_Time_Step.f90 modified: User_Mod/Insert_Particles.f90 modified: User_Mod/Interface_Exchange.f90 modified: User_Mod/Save_Swarm.f90

On branch bojan_sped_up_saving_big_time modified: Sources/Utilities/Parabolic.f90

On branch bojan_sped_up_saving_big_time modified: Sources/Process/User_Mod/Beginning_Of_Time_Step.f90

On branch bojan_sped_up_saving_big_time modified: Tests/Manual/Inflows/Option_3/control

On branch bojan_sped_up_saving_big_time new file: Tests/Manual/Inflows/Option_3/User_Mod/Beginning_Of_Time_Step.f90 modified: Tests/Manual/Inflows/Option_4/control renamed: Tests/Manual/Inflows/Option_4/User_Mod/End_Of_Time_Step.f90 -> Tests/Manual/Inflows/Option_5/User_Mod/End_Of_Time_Step.f90 renamed: Tests/Manual/Inflows/Option_4/User_Mod/Interface_Exchange.f90 -> Tests/Manual/Inflows/Option_5/User_Mod/Interface_Exchange.f90 new file: Tests/Manual/Inflows/Option_5/control renamed: Tests/Manual/Inflows/Option_4/control.1 -> Tests/Manual/Inflows/Option_5/control.1 renamed: Tests/Manual/Inflows/Option_4/control.2 -> Tests/Manual/Inflows/Option_5/control.2 modified: readme.md

No idea what is being merged. Wait, maybe I did some little editing inside the Github web page.

The problem was MPI_IN_PLACE, used in some communication routines - three of them to be precise. On branch bojan_fixed_bend_particles_case modified: Shared/Comm_Mod/Parallel/Global_Lor_Log_Array.f90 modified: Shared/Comm_Mod/Parallel/Global_Sum_Int_Array.f90 modified: Shared/Comm_Mod/Parallel/Global_Sum_Real_Array.f90 modified: Shared/Grid_Mod/Form_Cells_Comm.f90

Very recently I have changed the way files are named for parallel runs from: Sub-00001/ ... Sub-000NN/ which was fine from a functional point of view, but it was clutterning the working directory with too many sub- directiories. Next step I did was to change such a naming convention to: Sub/00001/ ... Sub/000NN/ which was better, because there would be just one new sub-directory, so less clutter. but still the same length of the file names. Finally, with this check-in, I am creating the sub- directories in the following way: Sub/1/ ... Sub/N/ when N < 10 Sub/01/ ... Sub/NN/ when N < 100 Sub/001/ ... Sub/NNN/ when N < 1000 Sub/0001/ ... Sub/NNNN/ when N < 10000 Sub/00001/ ... Sub/NNNNN/ otherwise Such an approach really shortens the paths and thus makes execution of many Linux commands easier. However, Divide purges the Sub directory at each decomposition. Althought this may seem radical, everytime you decompose you mess up the existing directory structure, so no harm is done, really. While implementing the above, I have also removed some redundancies in the modified functions, like unused variables, reduntant checks, using obsolete ways to check if run is parallel or sequential, and alike. On branch bojan_fixed_bend_particles_case modified: Convert/Main_Con.f90 modified: Divide/Divide_Mod/Save_Subdomains.f90 modified: Divide/Main_Div.f90 modified: Generate/Generate_Mod/Load_Dom.f90 modified: Generate/Main_Gen.f90 modified: Process/Front_Mod/Save_Debug_Front_Vtu.f90 modified: Process/Process_Mod/Initialize_Variables.f90 modified: Process/Read_Controls_Mod/Boundary_Conditions.f90 modified: Process/Results_Mod/Save_Vtu_Front.f90 modified: Process/Results_Mod/Save_Vtu_Results.f90 modified: Shared/Comm_Mod/Shared/Parallel_Run.f90 modified: Shared/Comm_Mod/Shared/Sequential_Run.f90 modified: Shared/Control_Mod/Basic_Functions/Open_Domain_File.f90 modified: Shared/Control_Mod/Basic_Functions/Open_Root_File.f90 modified: Shared/File_Mod/Open_For_Reading_Ascii.f90 modified: Shared/File_Mod/Open_For_Reading_Binary.f90 modified: Shared/File_Mod/Open_For_Writing_Ascii.f90 modified: Shared/File_Mod/Open_For_Writing_Binary.f90 modified: Shared/File_Mod/Set_Name.f90 modified: Shared/Grid_Mod/Determine_Threads.f90 modified: Shared/Grid_Mod/Load_And_Prepare_For_Processing.f90 modified: Shared/Grid_Mod/Load_Cfn.f90 modified: Shared/Grid_Mod/Load_Dim.f90 modified: Shared/Grid_Mod/Save_Cfn.f90 modified: Shared/Grid_Mod/Save_Debug_Vtu.f90 modified: Shared/Grid_Mod/Save_Dim.f90 modified: Shared/Grid_Mod/Save_Vtu_Cells.f90 modified: Shared/Grid_Mod/Save_Vtu_Faces.f90 new file: Shared/File_Mod/Purge_Sub.f90

No idea what it wants to pull

befor the last merge. Your branch is up to date with 'origin/bojan_fixed_bend_particles_case'. modified: Process/Front_Mod/Save_Debug_Front_Vtu.f90 modified: Process/Results_Mod/Save_Vtu_Front.f90 modified: Process/Results_Mod/Save_Vtu_Results.f90

On branch bojan_fixed_bend_particles_case modified: Int_Array.f90

On branch bojan_fixed_bend_particles_case new file: Recursive/Three_Int_Carry_Two_Int.f90

On branch bojan_fixed_bend_particles_case new file: Quick/Real_Carry_Two_Int.f90

On branch bojan_fixed_bend_particles_case modified: Shared/File_Mod/Open_For_Reading_Binary.f90 modified: Shared/File_Mod/Open_For_Writing_Binary.f90

On branch bojan_fixed_bend_particles_case new file: Shared/Sort_Mod/Heap/Real_Carry_Two_Int.f90

All sorting routines used to be based on heapsort many years ago, then I changed them for recursive quicksort, which works in vast majority of the time, but sometimes fails. That is why I re-introduced the heapsort, unfortunatelly coding it all back again from grounds up. On branch bojan_fixed_bend_particles_case modified: Shared/Sort_Mod.f90 new file: Shared/Sort_Mod/Heap/Int_Array.f90 new file: Shared/Sort_Mod/Heap/Int_Carry_Int.f90 new file: Shared/Sort_Mod/Heap/Int_Carry_Real.f90 new file: Shared/Sort_Mod/Heap/Real_Array.f90 new file: Shared/Sort_Mod/Heap/Real_Carry_Int.f90 new file: Shared/Sort_Mod/Heap/Three_Int.f90 new file: Shared/Sort_Mod/Heap/Three_Int_Carry_Int.f90 new file: Shared/Sort_Mod/Heap/Three_Int_Carry_Three_Int.f90 new file: Shared/Sort_Mod/Heap/Three_Int_Carry_Two_Int.f90 new file: Shared/Sort_Mod/Heap/Three_Real.f90 new file: Shared/Sort_Mod/Heap/Three_Real_Carry_Int.f90 new file: Shared/Sort_Mod/Heap/Three_Real_Carry_Three_Int.f90 new file: Shared/Sort_Mod/Heap/Three_Real_Carry_Two_Int.f90 new file: Shared/Sort_Mod/Heap/Two_Int.f90 new file: Shared/Sort_Mod/Heap/Two_Int_Carry_Int.f90 new file: Shared/Sort_Mod/Heap/Two_Int_Carry_Two_Int.f90 new file: Shared/Sort_Mod/Heap/Two_Real.f90 new file: Shared/Sort_Mod/Heap/Two_Real_Carry_Int.f90 new file: Shared/Sort_Mod/Heap/Two_Real_Carry_Two_Int.f90 renamed: Shared/Sort_Mod/Int_Array.f90 -> Shared/Sort_Mod/Quick/Int_Array.f90 renamed: Shared/Sort_Mod/Int_Carry_Int.f90 -> Shared/Sort_Mod/Quick/Int_Carry_Int.f90 renamed: Shared/Sort_Mod/Int_Carry_Real.f90 -> Shared/Sort_Mod/Quick/Int_Carry_Real.f90 renamed: Shared/Sort_Mod/Real_Array.f90 -> Shared/Sort_Mod/Quick/Real_Array.f90 renamed: Shared/Sort_Mod/Real_Carry_Int.f90 -> Shared/Sort_Mod/Quick/Real_Carry_Int.f90 renamed: Shared/Sort_Mod/Three_Int.f90 -> Shared/Sort_Mod/Quick/Three_Int.f90 renamed: Shared/Sort_Mod/Three_Int_Carry_Int.f90 -> Shared/Sort_Mod/Quick/Three_Int_Carry_Int.f90 renamed: Shared/Sort_Mod/Three_Int_Carry_Three_Int.f90 -> Shared/Sort_Mod/Quick/Three_Int_Carry_Three_Int.f90 renamed: Shared/Sort_Mod/Recursive/Three_Int_Carry_Two_Int.f90 -> Shared/Sort_Mod/Quick/Three_Int_Carry_Two_Int.f90 renamed: Shared/Sort_Mod/Three_Real.f90 -> Shared/Sort_Mod/Quick/Three_Real.f90 renamed: Shared/Sort_Mod/Three_Real_Carry_Int.f90 -> Shared/Sort_Mod/Quick/Three_Real_Carry_Int.f90 renamed: Shared/Sort_Mod/Three_Real_Carry_Three_Int.f90 -> Shared/Sort_Mod/Quick/Three_Real_Carry_Three_Int.f90 renamed: Shared/Sort_Mod/Three_Real_Carry_Two_Int.f90 -> Shared/Sort_Mod/Quick/Three_Real_Carry_Two_Int.f90 renamed: Shared/Sort_Mod/Two_Int.f90 -> Shared/Sort_Mod/Quick/Two_Int.f90 renamed: Shared/Sort_Mod/Two_Int_Carry_Int.f90 -> Shared/Sort_Mod/Quick/Two_Int_Carry_Int.f90 renamed: Shared/Sort_Mod/Two_Int_Carry_Two_Int.f90 -> Shared/Sort_Mod/Quick/Two_Int_Carry_Two_Int.f90 renamed: Shared/Sort_Mod/Two_Real.f90 -> Shared/Sort_Mod/Quick/Two_Real.f90 renamed: Shared/Sort_Mod/Two_Real_Carry_Int.f90 -> Shared/Sort_Mod/Quick/Two_Real_Carry_Int.f90 renamed: Shared/Sort_Mod/Two_Real_Carry_Two_Int.f90 -> Shared/Sort_Mod/Quick/Two_Real_Carry_Two_Int.f90 deleted: Shared/Sort_Mod/Real_Carry_Two_Int.f90 deleted: Shared/Sort_Mod/Three_Int_Carry_Two_Int.f90

Fixed something, anyway On branch bojan_fixed_bend_particles_case modified: Generate/Generate_Mod/Load_Dom.f90

On branch bojan_fixed_bend_particles_case modified: Tests/test_build.sh

On branch bojan_fixed_bend_particles_case modified: Documentation/Syntax/.vim/syntax/fortran.vim

On branch bojan_fixed_bend_particles_case modified: Sources/Convert/makefile new file: Sources/Convert/makefile_check_arguments modified: Sources/Convert/makefile_explicit_dependencies modified: Sources/Divide/makefile new file: Sources/Divide/makefile_check_arguments modified: Sources/Divide/makefile_explicit_dependencies modified: Sources/Generate/makefile new file: Sources/Generate/makefile_check_arguments modified: Sources/Generate/makefile_explicit_dependencies modified: Sources/Process/makefile new file: Sources/Process/makefile_check_arguments modified: Sources/Process/makefile_explicit_dependencies new file: Sources/Shared/makefile_check_arguments

On branch bojan_fixed_bend_particles_case modified: Tests/Laminar/Cavity/Lid_Driven/Hexahedral/Re_0100/control modified: Tests/Laminar/Cavity/Lid_Driven/Hexahedral/Re_0400/control modified: Tests/Laminar/Cavity/Lid_Driven/Hexahedral/Re_1000/control

On branch bojan_fixed_bend_particles_case modified: Sources/Process/makefile modified: Sources/Shared/makefile_check_arguments

Now they follow the style, and the logic, from their quicksort sisters. On branch bojan_fixed_bend_particles_case modified: Documentation/Syntax/.vim/syntax/fortran.vim modified: Sources/Shared/Sort_Mod/Heap/Real_Array.f90 modified: Sources/Shared/Sort_Mod/Heap/Real_Carry_Int.f90 modified: Sources/Shared/Sort_Mod/Heap/Real_Carry_Two_Int.f90 modified: Sources/Shared/Sort_Mod/Heap/Three_Int.f90 modified: Sources/Shared/Sort_Mod/Heap/Three_Real.f90 modified: Sources/Shared/Sort_Mod/Heap/Three_Real_Carry_Int.f90 modified: Sources/Shared/Sort_Mod/Heap/Three_Real_Carry_Three_Int.f90 modified: Sources/Shared/Sort_Mod/Heap/Three_Real_Carry_Two_Int.f90 modified: Sources/Shared/Sort_Mod/Heap/Two_Real.f90 modified: Sources/Shared/Sort_Mod/Heap/Two_Real_Carry_Int.f90 modified: Sources/Shared/Sort_Mod/Heap/Two_Real_Carry_Two_Int.f90

is scaled so the result stays the same.

…. Mass and kg/s are deleted from the file.

… 590.

Commits on Apr 26, 2023

fix typo: FORTRAN

yohei-sato-psi committed Apr 26, 2023

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Hamo fixes oct 2023 #253

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Hamo fixes oct 2023 #253

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