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[IA-4665] Fix gnomad for new hail versions #469

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merged 4 commits into from
Nov 1, 2023
Merged

[IA-4665] Fix gnomad for new hail versions #469

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8b6c21c
pin gnomad to the latest version that did not need pg
LizBaldo Nov 1, 2023
a830381
update changelogs
LizBaldo Nov 1, 2023
34a3ce1
update conf.json as well
LizBaldo Nov 1, 2023
ab946be
forgot to update aou version oops
LizBaldo Nov 1, 2023
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4 changes: 2 additions & 2 deletions config/conf.json
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Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@
"hail"
]
},
"version" : "1.1.6",
"version" : "1.1.7",
"automated_flags" : {
"generate_docs" : true,
"include_in_ui" : true,
Expand Down Expand Up @@ -135,7 +135,7 @@
"r"
],
"packages" : {},
"version" : "2.2.6",
"version" : "2.2.7",
"automated_flags" : {
"include_in_ui" : false,
"generate_docs" : false,
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10 changes: 8 additions & 2 deletions terra-jupyter-aou/CHANGELOG.md
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@@ -1,12 +1,18 @@
## 2.2.7 - 2023-11-01
- Pin `gnomad` to `0.6.4`
- See https://github.com/broadinstitute/gnomad_methods/releases for details

Image URL: `us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.7`

## 2.2.6 - 2023-10-30
- Update `hail` to `0.2.126`
- See https://hail.is/docs/0.2/change_log.html#version-0-2-126) for details
- See https://hail.is/docs/0.2/change_log.html#version-0-2-126 for details

Image URL: `us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.6`

## 2.2.5 - 2023-10-27
- Update `hail` to `0.2.125`
- See https://hail.is/docs/0.2/change_log.html#version-0-2-125) for details
- See https://hail.is/docs/0.2/change_log.html#version-0-2-125 for details

Image URL: `us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.5`

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2 changes: 1 addition & 1 deletion terra-jupyter-aou/Dockerfile
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Expand Up @@ -64,7 +64,7 @@ RUN find $JUPYTER_HOME/scripts -name '*.sh' -type f | xargs chmod +x \
# g++ \
# liblz4-dev \
# && update-alternatives --set java /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java \
&& pip3 install pypandoc gnomad \
&& pip3 install pypandoc gnomad==0.6.4 \
&& pip3 install --no-dependencies hail==$HAIL_VERSION \
&& X=$(mktemp -d) \
&& requirements_file=$(mktemp) \
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10 changes: 8 additions & 2 deletions terra-jupyter-hail/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,12 +1,18 @@
## 1.1.7 - 2023-11-01
- Pin `gnomad` to `0.6.4`
- See https://github.com/broadinstitute/gnomad_methods/releases for details

Image URL: `us.gcr.io/broad-dsp-gcr-public/terra-jupyter-hail:1.1.7`

## 1.1.6 - 2023-10-30
- Update `hail` to `0.2.126`
- See https://hail.is/docs/0.2/change_log.html#version-0-2-126) for details
- See https://hail.is/docs/0.2/change_log.html#version-0-2-126 for details

Image URL: `us.gcr.io/broad-dsp-gcr-public/terra-jupyter-hail:1.1.6`

## 1.1.5 - 2023-10-27
- Update `hail` to `0.2.125`
- See https://hail.is/docs/0.2/change_log.html#version-0-2-125) for details
- See https://hail.is/docs/0.2/change_log.html#version-0-2-125 for details

Image URL: `us.gcr.io/broad-dsp-gcr-public/terra-jupyter-hail:1.1.5`

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2 changes: 1 addition & 1 deletion terra-jupyter-hail/Dockerfile
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Expand Up @@ -23,7 +23,7 @@ RUN find $JUPYTER_HOME/scripts -name '*.sh' -type f | xargs chmod +x \
# g++ \
# liblz4-dev \
# && update-alternatives --set java /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java \
&& pip3 install pypandoc gnomad \
&& pip3 install pypandoc gnomad==0.6.4 \
&& pip3 install --no-dependencies hail==$HAIL_VERSION \
&& X=$(mktemp -d) \
&& requirements_file=$(mktemp) \
Expand Down
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