Update terra-jupyter-aou to Hail 0.2.128 (#476)

* Update terra-jupyter-aou to Hail version 0.2.127 * Update Dockerfile * Update CHANGELOG.md * Update CHANGELOG.md * update plink2 path --------- Co-authored-by: hail <hail@broadinstitute.org> Co-authored-by: LizBaldo <baldo@broadinstitute.org> Co-authored-by: LizBaldo <LizBaldo@users.noreply.github.com>
DataBiosphere · Mar 20, 2024 · e831395 · e831395
1 parent e676dd0
commit e831395
Show file tree

Hide file tree

Showing 3 changed files with 9 additions and 3 deletions.
diff --git a/config/conf.json b/config/conf.json
@@ -135,7 +135,7 @@
                 "r"
             ],
             "packages" : {},
-            "version" : "2.2.8",
+            "version" : "2.2.9",
             "automated_flags" : {
                 "include_in_ui" : false,
                 "generate_docs" : false,

diff --git a/terra-jupyter-aou/CHANGELOG.md b/terra-jupyter-aou/CHANGELOG.md
@@ -1,3 +1,9 @@
+## 2.2.9 - 2024-01-12
+- Update `hail` to `0.2.128`
+  - See https://hail.is/docs/0.2/change_log.html#version-0-2-128) for details
+
+Image URL: `us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:2.2.9`
+
 ## 2.2.8 - 2023-11-14T15:56:44.507726350Z
 
 - Update `terra-jupyter-gatk` to `2.3.6`

diff --git a/terra-jupyter-aou/Dockerfile b/terra-jupyter-aou/Dockerfile
@@ -47,7 +47,7 @@ ENV PYTHONPATH $PYTHONPATH:/usr/lib/spark/python
 
 ENV PYSPARK_PYTHON=python3
 
-ENV HAIL_VERSION=0.2.126
+ENV HAIL_VERSION=0.2.128
 
 RUN find $JUPYTER_HOME/scripts -name '*.sh' -type f | xargs chmod +x \
     && $JUPYTER_HOME/scripts/kernel/kernelspec.sh $JUPYTER_HOME/scripts/kernel /opt/conda/share/jupyter/kernels \
@@ -95,7 +95,7 @@ RUN mkdir -p /tmp/plink && \
 
 RUN mkdir -p /tmp/plink2 && \
   cd /tmp/plink2 && \
-  curl -fsSL -o plink2.zip "https://s3.amazonaws.com/plink2-assets/alpha2/plink2_linux_x86_64.zip" && \
+  curl -fsSL -o plink2.zip "https://s3.amazonaws.com/plink2-assets/plink2_linux_x86_64_latest.zip" && \
   unzip plink2.zip && \
   mv plink2 /bin/plink2 && \
   cd $HOME && \