try to install XML as a prerequisite

DataBiosphere · Sep 11, 2024 · 3e4649a · 3e4649a
1 parent 8e5c192
commit 3e4649a
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/terra-jupyter-r/Dockerfile b/terra-jupyter-r/Dockerfile
@@ -168,6 +168,7 @@ RUN R -e 'install.packages("BiocManager")' \
 # Install Bioconductor packages found at:
 # https://raw.githubusercontent.com/anvilproject/anvil-docker/master/anvil-rstudio-bioconductor/install.R
 RUN R -e 'BiocManager::install(c( \
+	"XML", \
     "AnVIL", \
     "SingleCellExperiment", \
     "GenomicFeatures", \
@@ -187,4 +188,4 @@ ENV PIP_USER=true
 RUN R -e 'IRkernel::installspec(user=FALSE)' \
     && chown -R $USER:users /usr/local/lib/R/site-library /home/jupyter
 
-USER $USER
+USER $USER