Skip to content
@DILiS-lab

DILiS-lab

Popular repositories Loading

  1. SimbaML SimbaML Public

    SimbaML is an all-in-one framework for integrating prior knowledge of ODE models into the ML process by synthetic data augmentation. It allows for the convenient generation of realistic synthetic d…

    Python 2 1

  2. SimbaML_examples SimbaML_examples Public

    Jupyter Notebook 1 1

  3. pyproteonet pyproteonet Public

    Python package for imputation, peptide-to-protein aggregation as well as in silico data creation of proteomics data with a specific focus on the development and evaluation of imputation methods in …

    Python 1

  4. pepermint pepermint Public

    Graph Neural Network for Peptide Abundance Imputation in MS Proteomics Data

    Jupyter Notebook 1

  5. opt-synthdata-4tl opt-synthdata-4tl Public

    This is the code repository for the paper "Optimizing ODE-derived Synthetic Data for Transfer Learning in Dynamical Biological Systems".

    Jupyter Notebook 1 1

  6. pmotif_lib pmotif_lib Public

    Forked from timgarrels/pmotif_lib

    Perform motif detection, either with traditional frequency, or with positional metrics for each graphlet occurrence.

    Python

Repositories

Showing 8 of 8 repositories
  • opt-synthdata-4tl Public

    This is the code repository for the paper "Optimizing ODE-derived Synthetic Data for Transfer Learning in Dynamical Biological Systems".

    DILiS-lab/opt-synthdata-4tl’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 1 0 1 Updated Aug 9, 2024
  • pepermint Public

    Graph Neural Network for Peptide Abundance Imputation in MS Proteomics Data

    DILiS-lab/pepermint’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated May 20, 2024
  • pyproteonet Public

    Python package for imputation, peptide-to-protein aggregation as well as in silico data creation of proteomics data with a specific focus on the development and evaluation of imputation methods in proteomics. Also provides proteomics specific imputation methods based on graph neural networks.

    DILiS-lab/pyproteonet’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Mar 6, 2024
  • GNN_imputer Public

    Graph Neural Network Driven Imputation of Missing Abundances in Mass Spectrometry-Based Proteomics

    DILiS-lab/GNN_imputer’s past year of commit activity
    Python 0 0 0 0 Updated Nov 2, 2023
  • SimbaML Public

    SimbaML is an all-in-one framework for integrating prior knowledge of ODE models into the ML process by synthetic data augmentation. It allows for the convenient generation of realistic synthetic data by sparsifying and adding noise. Furthermore, our framework provides customizable pipelines for various ML experiments, such as transfer learning.

    DILiS-lab/SimbaML’s past year of commit activity
    Python 2 MIT 1 6 0 Updated Oct 11, 2023
  • pmotif_analytics Public Forked from timgarrels/MA_analytics

    Collection of tools to run analyses based on the pmotif_lib py-package

    DILiS-lab/pmotif_analytics’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 24, 2023
  • pmotif_lib Public Forked from timgarrels/pmotif_lib

    Perform motif detection, either with traditional frequency, or with positional metrics for each graphlet occurrence.

    DILiS-lab/pmotif_lib’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Jul 24, 2023
  • SimbaML_examples Public
    DILiS-lab/SimbaML_examples’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Apr 2, 2023

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…