Fix for trim_primers_3end parameter and primer sequences containing ambiguous nucleotides
#215
gregdenay
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linter.yaml
on: pull_request
formatting
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linting
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Annotations
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linting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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formatting:
workflow/scripts/benchmark_report.Rmd#L22
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=22,col=5,[assignment_linter] Use <-, not =, for assignment.
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formatting:
workflow/scripts/benchmark_report.Rmd#L22
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=22,col=36,[infix_spaces_linter] Put spaces around all infix operators.
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formatting:
workflow/scripts/benchmark_report.Rmd#L26
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=26,col=35,[single_quotes_linter] Only use double-quotes.
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formatting:
workflow/scripts/benchmark_report.Rmd#L26
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=26,col=41,[commas_linter] Commas should always have a space after.
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formatting:
workflow/scripts/benchmark_report.Rmd#L26
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=26,col=48,[infix_spaces_linter] Put spaces around all infix operators.
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formatting:
workflow/scripts/benchmark_report.Rmd#L26
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=26,col=54,[commas_linter] Commas should always have a space after.
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formatting:
workflow/scripts/benchmark_report.Rmd#L26
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=26,col=63,[infix_spaces_linter] Put spaces around all infix operators.
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formatting:
workflow/scripts/benchmark_report.Rmd#L26
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=26,col=64,[single_quotes_linter] Only use double-quotes.
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formatting:
workflow/scripts/benchmark_report.Rmd#L26
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=26,col=73,[commas_linter] Commas should always have a space after.
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formatting:
workflow/scripts/benchmark_report.Rmd#L26
file=/github/workspace/workflow/scripts/benchmark_report.Rmd,line=26,col=77,[infix_spaces_linter] Put spaces around all infix operators.
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