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Upgrade to Blender 4.1 #476

Merged
merged 78 commits into from
Apr 9, 2024
Merged

Upgrade to Blender 4.1 #476

merged 78 commits into from
Apr 9, 2024

Commits on Apr 3, 2024

  1. initial new BCIF class which handles biotite's new BCIF

    @BradyAJohnston
    BradyAJohnston committed Apr 3, 2024
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  2. add (mostly) working assemblies for bcif

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    BradyAJohnston committed Apr 3, 2024
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  3. cleanup 'get_transformations'

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    BradyAJohnston committed Apr 3, 2024
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Commits on Apr 4, 2024

  1. fix extract of assemblies

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    BradyAJohnston committed Apr 4, 2024
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  2. fix parsing of oper expressions

    @BradyAJohnston
    BradyAJohnston committed Apr 4, 2024
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  3. change bcif and cif to take from same pdbx parser

    @BradyAJohnston
    BradyAJohnston committed Apr 4, 2024
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  4. bump versions

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    BradyAJohnston committed Apr 4, 2024
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  5. bump

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    BradyAJohnston committed Apr 4, 2024
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  6. Merge branch '4.1' into dev-biotite

    @BradyAJohnston
    BradyAJohnston authored Apr 4, 2024
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  7. run tests on all PRs

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    BradyAJohnston committed Apr 4, 2024
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  8. run tests on all PRs

    @BradyAJohnston
    BradyAJohnston committed Apr 4, 2024
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  9. update entity_ids attribute

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    BradyAJohnston committed Apr 4, 2024
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  10. update snapshots for bond types

    @BradyAJohnston
    BradyAJohnston committed Apr 4, 2024
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  11. fix cellpack import

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    BradyAJohnston committed Apr 4, 2024
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  12. remove mmtf and replace with bcif

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    BradyAJohnston committed Apr 4, 2024
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  13. add test data to data dir

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    BradyAJohnston committed Apr 4, 2024
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  14. update snapshots to remove mmtf and add bcif

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    BradyAJohnston committed Apr 4, 2024
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  15. fix entity_ids returning the actual labels rather than ints

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    BradyAJohnston committed Apr 4, 2024
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  16. fix assemblies and update snapshots

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    BradyAJohnston committed Apr 4, 2024
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  17. fix tests and add snapshots

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    BradyAJohnston committed Apr 4, 2024
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  18. finalise all tests

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    BradyAJohnston committed Apr 4, 2024
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  19. update python versions for GHA

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    BradyAJohnston committed Apr 4, 2024
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  20. drop python and bpy versions back to 4.0

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    BradyAJohnston committed Apr 4, 2024
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  21. Merge pull request #477 from BradyAJohnston/dev-biotite 

    upgrade biotite to 0.40.0 and drop mmtf replace with bcif
    @BradyAJohnston
    BradyAJohnston authored Apr 4, 2024
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  22. trigger GHA change

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    BradyAJohnston committed Apr 4, 2024
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  23. trigger GHA change

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    BradyAJohnston committed Apr 4, 2024
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  24. add back density snapshots

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    BradyAJohnston committed Apr 4, 2024
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Commits on Apr 5, 2024

  1. add script for running pytest using Blender

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    BradyAJohnston committed Apr 5, 2024
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  2. new custom color switch function

    @BradyAJohnston
    BradyAJohnston committed Apr 5, 2024
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  3. improve error messaging

    @BradyAJohnston
    BradyAJohnston committed Apr 5, 2024
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  4. more test for color node creation

    @BradyAJohnston
    BradyAJohnston committed Apr 5, 2024
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  5. GHA for running tests _in_ blender

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    BradyAJohnston committed Apr 5, 2024
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  6. maybe install and run tests

    @BradyAJohnston
    BradyAJohnston committed Apr 5, 2024
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  7. fix type

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    BradyAJohnston committed Apr 5, 2024
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  8. test install on mac

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    BradyAJohnston committed Apr 5, 2024
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  9. fix type

    @BradyAJohnston
    BradyAJohnston committed Apr 5, 2024
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  10. fix type

    @BradyAJohnston
    BradyAJohnston committed Apr 5, 2024
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  11. fix type

    @BradyAJohnston
    BradyAJohnston committed Apr 5, 2024
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  12. fix arm version

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    BradyAJohnston committed Apr 5, 2024
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  13. fix arm version

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    BradyAJohnston committed Apr 5, 2024
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  14. adjust install script

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    BradyAJohnston committed Apr 5, 2024
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  15. try macos13

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    BradyAJohnston committed Apr 5, 2024
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  16. fix macos13

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    BradyAJohnston committed Apr 5, 2024
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  17. fix macos13

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    BradyAJohnston committed Apr 5, 2024
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  18. add poetry

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    BradyAJohnston committed Apr 5, 2024
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  19. add poetry

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    BradyAJohnston committed Apr 5, 2024
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  20. remove poetry

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  21. fix tests and update snapshots

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    BradyAJohnston committed Apr 5, 2024
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  22. fix some density issues, create others

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    BradyAJohnston committed Apr 5, 2024
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Commits on Apr 6, 2024

  1. fix starfile tests

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    BradyAJohnston committed Apr 6, 2024
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  2. fixed density importing 

    it seems that there is now a blender 4.1 issue where even if the underlying `.vdb` changes, if you reimport the file it still uses the preview for the 'old' version.

Because of this, the created .vdb file path now contains whether or not it was centred and inverted, which makes different files and fixes the issues.
    @BradyAJohnston
    BradyAJohnston committed Apr 6, 2024
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  3. combine into general purpose custom_iswitch node

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    BradyAJohnston committed Apr 6, 2024
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  4. bump to 4.1 for broad testing

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    BradyAJohnston committed Apr 6, 2024
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  5. cleanup test runners

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    BradyAJohnston committed Apr 6, 2024
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  6. skip over segfaulting test

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    BradyAJohnston committed Apr 6, 2024
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  7. skip potentially segfaulting tests on GHA

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    BradyAJohnston committed Apr 6, 2024
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Commits on Apr 7, 2024

  1. Merge pull request #481 from BradyAJohnston/fix-custom-nodes 

    Change bpy to 4.1, python to 3.11 and fix custom node creation
    @BradyAJohnston
    BradyAJohnston authored Apr 7, 2024
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  2. update actions versions

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    BradyAJohnston committed Apr 7, 2024
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  3. Merge branch '4.1' of github.com:BradyAJohnston/MolecularNodes into 4.1

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    BradyAJohnston committed Apr 7, 2024
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  4. bump python to 3.11.7

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    BradyAJohnston committed Apr 7, 2024
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  5. fix docs build

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    BradyAJohnston committed Apr 7, 2024
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  6. add other runners

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    BradyAJohnston committed Apr 7, 2024
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  7. maybe fix

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    BradyAJohnston committed Apr 7, 2024
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  8. maybe fix

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    BradyAJohnston committed Apr 7, 2024
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  9. fix

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    BradyAJohnston committed Apr 7, 2024
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  10. maybe fix

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    BradyAJohnston committed Apr 7, 2024
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  11. mostly fix (just windows left)

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    BradyAJohnston committed Apr 7, 2024
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Commits on Apr 8, 2024

  1. drop starfile tests, maybe if succeeds?

    @BradyAJohnston
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  2. fix docs build

    @BradyAJohnston
    BradyAJohnston committed Apr 8, 2024
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  3. fix docs build

    @BradyAJohnston
    BradyAJohnston committed Apr 8, 2024
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  4. maybe fix windows blender testing

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    BradyAJohnston committed Apr 8, 2024
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  5. maybe fix windows

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    BradyAJohnston committed Apr 8, 2024
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  6. maybe fix docs and windows

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    BradyAJohnston committed Apr 8, 2024
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  7. fix windows testing in blender

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    BradyAJohnston committed Apr 8, 2024
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  8. return exit codes for tests

    @BradyAJohnston
    BradyAJohnston committed Apr 8, 2024
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  9. maybe fix windows path

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    BradyAJohnston committed Apr 8, 2024
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  10. fix windows, only upload coverage from linux

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    BradyAJohnston committed Apr 8, 2024
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  11. fix upload

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    BradyAJohnston committed Apr 8, 2024
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