Skip to content
/ UTRdb Public

Main scripts to process and collect UTR annotations

License

CC0-1.0 license
4 stars 0 forks Branches Tags Activity
Star
Notifications You must be signed in to change notification settings

BioinfoUNIBA/UTRdb

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

37 Commits
CAGEs.sh
CAGEs.sh
 
 
CAGEs_bed_extraction.py
CAGEs_bed_extraction.py
 
 
Ires_html_parser.py
Ires_html_parser.py
 
 
Ires_table.html
Ires_table.html
 
 
LICENSE
LICENSE
 
 
Mus_musculus.GRCm38.95.m6a.gz
Mus_musculus.GRCm38.95.m6a.gz
 
 
README.md
README.md
 
 
RMVar_Human_basic_info_m6Am.zip
RMVar_Human_basic_info_m6Am.zip
 
 
ReadGTFutrdb.py
ReadGTFutrdb.py
 
 
Rediportal_bed_extraction.py
Rediportal_bed_extraction.py
 
 
Rfam_fasta_prepare.py
Rfam_fasta_prepare.py
 
 
UTR_parser.py
UTR_parser.py
 
 
UTRdblogo.png
UTRdblogo.png
 
 
apadb_bed_extraction.py
apadb_bed_extraction.py
 
 
cages_mysql_table_prepare.py
cages_mysql_table_prepare.py
 
 
ensmbl_rptann_dwnld.py
ensmbl_rptann_dwnld.py
 
 
gene_ontologies.py
gene_ontologies.py
 
 
gene_ontologies_extrctr.py
gene_ontologies_extrctr.py
 
 
go_add_descr.py
go_add_descr.py
 
 
launcher_rfam_extraction.sh
launcher_rfam_extraction.sh
 
 
m6a.py
m6a.py
 
 
m6a_mysql_table_prepare.py
m6a_mysql_table_prepare.py
 
 
mirna_mysql_extractor.py
mirna_mysql_extractor.py
 
 
mysql_cages_table_loader.py
mysql_cages_table_loader.py
 
 
phastcons_bed_extraction.py
phastcons_bed_extraction.py
 
 
phastcons_mysql_table_prepare.py
phastcons_mysql_table_prepare.py
 
 
rdprtl_editing_mysql_table_prepare.py
rdprtl_editing_mysql_table_prepare.py
 
 
rediportal_mm10.txt
rediportal_mm10.txt
 
 
repeats_bed_extraction.py
repeats_bed_extraction.py
 
 
repeats_mysql_table_prepare.py
repeats_mysql_table_prepare.py
 
 
rfam_table_prepare.py
rfam_table_prepare.py
 
 
utr_orthologs_extractor.py
utr_orthologs_extractor.py
 
 
variants_bed_extraction.py
variants_bed_extraction.py
 
 
variants_downloader.py
variants_downloader.py
 
 
variants_mysql_table_prepare.py
variants_mysql_table_prepare.py
 
 

Repository files navigation

UTRdb

A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs

This repository hosts main scripts to process and collect UTR annotations for UTRdb, a curated collection of 5’ and 3’ untraslated regions from eukaryotic mRNAs conmprising over 26 million entries from 573 species.

About

Main scripts to process and collect UTR annotations

Resources

Readme

License

CC0-1.0 license
Activity

Stars

4 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

No releases published

Packages

No packages published

Contributors 2

  •  
  •  

Languages