Skip to content

Releases: BIMSBbioinfo/ciRcus

v0.1.7

04 Dec 17:02
Compare
Choose a tag to compare

IMPROVEMENTS AND BUG FIXES

  • 18-column find_circ output (wherever it comes from) supported

v0.1.6

04 Dec 15:57
Compare
Choose a tag to compare

NEW FEATURES

  • new bedTracks()/writeBedTracks() functions generating BED6-style
    GRangesList/writing BED files for circRNA browser tracks
  • added D. melanogaster (dm6) and R. norvegicus (rn6) support

IMPROVEMENTS AND BUG FIXES

  • using "coarse" pruning.mode in keepStandardChromosomes when building annotation
  • introduced a number of bugfixes (and probably new bugs)

v0.1.5

27 Mar 14:29
Compare
Choose a tag to compare

NEW FEATURES

  • loadAnnotation() converted to S4, can digest both TxDb objects and their sqlite dumps

IMPROVEMENTS AND BUG FIXES

  • circLinRatio bug that prevented the ratio from being calculated in 0.1.4 fixed
  • many under-the-hood improvements (travis, lintr, codecov...) users will indirectly benefit from

v0.1.4

09 Mar 14:21
Compare
Choose a tag to compare
Merge pull request #21 from BIMSBbioinfo/dev2

ciRcus v0.1.4

v0.1.1

11 Mar 15:56
Compare
Choose a tag to compare
  • added find_circ v1.2 support

ciRcus demo

23 Oct 17:11
Compare
Choose a tag to compare

A preliminary ciRcus version. Basic annotation, quantification and plots supported.