Skip to content

Issues: AlphaGenes/AlphaPeel

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

79 Open 58 Closed
79 Open 58 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Small bug in simulation code for accuracy test
#181 opened Nov 11, 2024 by XingerTang
Update User Warnings
#180 opened Oct 24, 2024 by RosCraddock
call_phase argument not documented
#179 opened Oct 22, 2024 by janaobsteter
2
Review functional tests for specific errors
#178 opened Oct 14, 2024 by RosCraddock
No improvement with true recombination rate
#174 opened Sep 3, 2024 by XingerTang
1
Recombination event interval prediction
#173 opened Aug 28, 2024 by XingerTang
Review Accuracy Test Outputs
#172 opened Aug 22, 2024 by RosCraddock
3 tasks
Add seed value input to the tests
#170 opened Aug 19, 2024 by XingerTang
Improve the algorithm of the main peeling function
#169 opened Jun 28, 2024 by XingerTang
3 of 10 tasks
9
Recombination map initialization with partial chromosome
#168 opened Jun 21, 2024 by XingerTang
Build functionality to input phased data
#167 opened Jun 6, 2024 by AprilYUZhang
3
Documentation update for Alternative Allele Frequencies Output
#166 opened Jun 5, 2024 by RosCraddock
implement Viterbi on segregation prob
#165 opened May 29, 2024 by AprilYUZhang
23
Mutation rate in AlphaPeel enhancement New feature or request
#164 opened May 22, 2024 by XingerTang
3
Formula modificaiton for the estimation of recombinaiton rate
#162 opened Apr 5, 2024 by AprilYUZhang
21
Do we need to add base population inbreeding coefficient?
#161 opened Mar 28, 2024 by gregorgorjanc
Can we estimate effect of some other factors on genotype and allele probabilities?
#160 opened Mar 26, 2024 by gregorgorjanc
Update Change Log for new metafounders and alternative allele frequencies functionality.
#159 opened Jan 14, 2024 by RosCraddock
1
Ensure map file input is handled properly when not sorted in ascending order
#155 opened Jan 10, 2024 by XingerTang
1
Develop tests for alt_allele_prob_file and est_alt_allele_prob with multiple metafounders
#150 opened Jan 4, 2024 by XingerTang
1 of 5 tasks
3
Estimation of allele freq with metafounders
#148 opened Jan 4, 2024 by XingerTang
23
Consolidate storing maf between PeelingInfo and Pedigree
#147 opened Jan 4, 2024 by XingerTang
1
Estimate rec_prob
#145 opened Dec 22, 2023 by XingerTang
3 tasks
1
Add rec_prob input and output
#144 opened Dec 22, 2023 by XingerTang
3 of 5 tasks
@XingerTang
10
Check all the arguements and design logic tests
#143 opened Dec 11, 2023 by AprilYUZhang
6 tasks
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.