Enable direct SD card readout

Aharoni-Lab · Aug 13, 2023 · bc9370a · bc9370a
1 parent 713c434
commit bc9370a
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Showing 2 changed files with 36 additions and 184,848 deletions.
diff --git a/miniscope_io/io.py b/miniscope_io/io.py
@@ -29,11 +29,15 @@ class SDCard:
     def __init__(
             self,
             drive: Union[str, Path],
-            layout: SDLayout
-
+            layout: SDLayout,
+            directpath: bool = False
         ):
 
-        self.drive = Path(drive).resolve()
+        if directpath == False:
+            self.drive = Path(drive).resolve()
+        else:
+            self.drive = drive
+    # Logs the error appropriately. 
         self.layout = layout
 
         # Private attributes used when the file reading context is entered
@@ -68,17 +72,20 @@ def __init__(
     @property
     def config(self) -> SDConfig:
         if self._config is None:
-            with open(self.drive, 'rb') as sd:
-                sd.seek(self.layout.sectors.config_pos, 0)
-                configSectorData = np.frombuffer(sd.read(self.layout.sectors.size), dtype=np.uint32)
-
-            self._config = SDConfig(
-                **{
-                    k: configSectorData[v]
-                    for k, v in self.layout.config.dict().items()
-                    if v is not None
-                }
-            )
+            try:
+                with open(self.drive, 'rb') as sd:
+                    sd.seek(self.layout.sectors.config_pos, 0)
+                    configSectorData = np.frombuffer(sd.read(self.layout.sectors.size), dtype=np.uint32)
+
+                self._config = SDConfig(
+                    **{
+                        k: configSectorData[v]
+                        for k, v in self.layout.config.dict().items()
+                        if v is not None
+                    }
+                )
+            except Exception as error:
+                print("An exception occurred:", error)
 
         return self._config