fix ci #62
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| name: Build package and publish | |
| on: | |
| push: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| container: ${{ matrix.container }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.10"] | |
| container: ["quay.io/pypa/manylinux_2_28_x86_64"] | |
| defaults: # Needed for conda | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "*" | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge,defaults | |
| activate-environment: ../my-env | |
| - name: Install yum deps | |
| run: | | |
| yum groupinstall -y "Development Tools" | |
| yum install -y popt-devel cppunit-devel | |
| - name: Build rDock package | |
| shell: bash -l {0} | |
| run: | | |
| git config --global --add safe.directory '*' | |
| conda install anaconda-client conda-build conda-verify | |
| conda build conda-package/ --output-folder ./pkg/ --no-include-recipe --no-anaconda-upload -c conda-forge | |
| - name: Test package | |
| run: | | |
| conda install -q -y ./pkg/linux-64/rdock-*.tar.bz2 | |
| conda install -q -y pytest | |
| pytest ./tests/ | |
| - name: Upload to conda | |
| shell: bash -l {0} | |
| run: | | |
| anaconda -t ${{ secrets.ANACONDA_TOKEN_BASIC }} upload -u acellera ./pkg/*/rdock-*.tar.bz2 |