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Merge branch 'upmaster' (early part) into torchann
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Zhang committed Oct 18, 2023
2 parents 5f4e6f7 + 1335461 commit ee5254f
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1 change: 1 addition & 0 deletions doc/colvars-refman-css.tex
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% Colvars repository at GitHub.

\Css{
body { font-family: sans-serif; }
li { margin-bottom:1em; }
.heading {
background-color: rgb(215, 215, 215);
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2 changes: 1 addition & 1 deletion doc/colvars-refman-main.tex
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To select atoms via the \refkey{atomsFile}{atom-group|atomsFile} keyword, the option \refkey{atomsFile}{atom-group|atomsCol} is required, and atoms are selected based on either one of the following cases.
\begin{enumerate}
\item[\emph{(i)}] All atoms with a non-zero value of the corresponding column are selected.
\item[\emph{(ii)}] If and only if \refkey{atomsFile}{atom-group|atomsColValue} is provided, only atoms with a value of \texttt{atomsCol} equaling \texttt{atomsColValue} are selected.
\item[\emph{(ii)}] If and only if \refkey{atomsColValue}{atom-group|atomsColValue} is provided, only atoms with a value of \texttt{atomsCol} equaling \texttt{atomsColValue} are selected.
This can be useful to reuse the same PDB file for generating multiple selections.
\end{enumerate}

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4 changes: 2 additions & 2 deletions doc/colvars-refman.tex
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\usepackage{mathrsfs}

\usepackage[T1]{fontenc}
\usepackage{times}
\usepackage{inconsolata}
\usepackage{mathptmx}
\usepackage{helvet}
\renewcommand{\familydefault}{\sfdefault}

\usepackage{calc}

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