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comments from bcc2020 cofest #6

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ieguinoa opened this issue Jul 22, 2020 · 0 comments

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ieguinoa commented Jul 22, 2020

Abstract CWL
Don’t have to get the types perfect, when in doubt use https://www.commonwl.org/v1.1/Workflow.html#Any
Example: https://workflowhub.eu/workflows/14/ro_crate?version=1 if you open this and look at the .cwl file, that is abstract CWL (Generated from the .ga file)
common-workflow-language/cwl-utils#27
https://github.com/PMCC-BioinformaticsCore/janis-core/blob/master/janis_core/translations/cwl.py
https://github.com/ResearchObject/ro-crate-py
CWL validation: cwltool --enable-dev --validate path/to/cwl
https://github.com/common-workflow-language/cwl-utils/blob/main/cwl_utils/parser_v1_1.py
https://github.com/common-workflow-language/cwl-utils/blob/main/cwl_utils/cite_extract.py
https://github.com/common-workflow-language/cwl-utils
https://gitter.im/common-workflow-language/common-workflow-language
https://workflowhub.eu/workflows/14/
Want to suggest a new Abstract CWL feature? https://github.com/common-workflow-language/common-workflow-language/issues/new
https://www.commonwl.org/user_guide/

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